Publications

  1. Tamarit MAS, Carey L (2018) Poor codon optimality as a signal to degrade transcripts with frameshifts. bioRxiv:345595.
  2. Schikora-Tamarit MÀ, et al. (2018) Promoter Activity Buffering Reduces the Fitness Cost of Misregulation. Cell Rep 24(3):755–765.
  3. Duan C, et al. (2018) DNA local structure decreases mutation rates. bioRxiv:302133.
  4. Borca MV, et al. (2018) The L83L ORF of African swine fever virus strain Georgia encodes for a non-essential gene that interacts with the host protein IL-1β. Virus Res. doi:10.1016/j.virusres.2018.03.017.
  5. Espinar L, Schikora Tamarit MÀ, Domingo J, Carey LB (2018) Promoter architecture determines cotranslational regulation of mRNA. Genome Res. doi:10.1101/gr.230458.117.
  6. Lehner B, Dhar R, Missarova A, Carey LB (2018) Single cell functional genomics reveals the importance of mitochondria in cell-to-cell variation in proliferation, drug resistance and mutation outcome. bioRxiv. Available at: https://www.biorxiv.org/content/early/2018/06/13/346361.abstract.
  7. Di Giovanni F, et al. (2017) The spatial position of budding yeast chromosomes affects gene expression. bioRxiv:237263.
  8. Pokusaeva V, et al. (2017) Experimental assay of a fitness landscape on a macroevolutionary scale. bioRxiv:222778.
  9. Blevins W, Albà M, Carey L (2017) Comparative transcriptomics and ribo-seq: Looking at de novo gene emergence in Saccharomycotina (PeerJ Preprints) doi:10.7287/peerj.preprints.3030v1.
  10. van Dijk D, et al. (2017) Large-scale mapping of gene regulatory logic reveals context-dependent repression by transcriptional activators. Genome Res 27(1):87–94.
  11. Zhao G, Chen Y, Carey L, Futcher B (2016) Cyclin-Dependent Kinase Co-Ordinates Carbohydrate Metabolism and Cell Cycle in S. cerevisiae. Mol Cell 62(4):546–557.
  12. Schikora-Tamarit MÀ, Toscano-Ochoa C, Espinós JD, Espinar L, Carey LB (2016) A synthetic gene circuit for measuring autoregulatory feedback control. Integr Biol. doi:10.1039/C5IB00230C.
  13. Carey LB (2015) RNA polymerase errors cause splicing defects and can be regulated by differential expression of RNA polymerase subunits. Elife 4. doi:10.7554/eLife.09945.
  14. van Dijk D, et al. (2015) Slow-growing cells within isogenic populations have increased RNA polymerase error rates and DNA damage. Nat Commun 6:7972.
  15. van Dijk D, Manor O, Carey LB (2014) Publication metrics and success on the academic job market. Curr Biol 24(11):R516–7.
  16. Fernández-Sainz IJ, et al. (2014) Effect of specific amino acid substitutions in the putative fusion peptide of structural glycoprotein E2 on Classical Swine Fever Virus replication. Virology 456-457:121–130.
  17. Gabalda-Sagarra M, Carey L, Garcia-Ojalvo J (2014) State-dependent information processing in gene regulatory networks. bioRxiv. Available at: http://biorxiv.org/content/biorxiv/early/2014/10/08/010124.full.pdf.
  18. Dvir S, et al. (2013) Deciphering the rules by which 5’-UTR sequences affect protein expression in yeast. Proc Natl Acad Sci U S A 110(30):E2792–801.
  19. Carey LB, Dinitz M, Tillo D (2013) Highly efficient and effective removal of fat from fried chicken via centrifugation. Annals of Improbable Research 19(2):12–13.
  20. Rest JS, et al. (2013) Nonlinear fitness consequences of variation in expression level of a eukaryotic gene. Mol Biol Evol 30(2):448–456.
  21. Opulente DA, Morales CM, Carey LB, Rest JS (2013) Coevolution trumps pleiotropy: carbon assimilation traits are independent of metabolic network structure in budding yeast. PLoS One 8(1):e54403.
  22. Carey LB, van Dijk D, Sloot PMA, Kaandorp JA, Segal E (2013) Promoter sequence determines the relationship between expression level and noise. PLoS Biol 11(4):e1001528.
  23. Shalem O, et al. (2013) Measurements of the impact of 3’ end sequences on gene expression reveal wide range and sequence dependent effects. PLoS Comput Biol 9(3):e1002934.
  24. Wang H, Carey LB, Cai Y, Wijnen H, Futcher B (2009) Recruitment of Cln3 cyclin to promoters controls cell cycle entry via histone deacetylase and other targets. PLoS Biol 7(9):e1000189.
  25. Carey LB, Leatherwood JK, Futcher B (2008) Huxley’s revenge: cell-cycle entry, positive feedback, and the G1 cyclins. Mol Cell 31(3):307–308.
  26. Darling A, Carey BL, Feng W-C (2003) The design, implementation, and evaluation of mpiBLAST. Proceedings of ClusterWorld 2003:13–15.