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1.     Kang, Yu; Deng, Rui; Wang, Can; Etiologic Diagnosis of Lower Respiratory Tract Bacterial Infections Using Sputum Samples and Quantitative Loop-Mediated Isothermal Amplification, PLOS ONE; 7(6), e38743, DOI: 10.1371/journal.pone.0038743, 2012


2.        Lai, Binbin; Ding, Ruogu; Li, Yang; A de novo metagenomic assembly program for shotgun DNA reads, BIOINFORMATICS;28(11), 1455-1462,  DOI: 10.1093/bioinformatics/bts162, 2012


3.        Huang, Yongqi; Cao, Huaiqing; Liu, Zhiron; Three-dimensional domain swapping in the protein structure space, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS,  806, 1610-1619,  DOI: 10.1002/prot.24055, 2012


4.        Hu Yan-Bao; Peng Jing-Bo; Gu Shuo; Molecular Docking in Xin-Ke-Shu Preparation's Multi-Target Effect on Coronary Heart Disease , ACTA PHYSICO-CHIMICA SINICA,28(5), 1257-1264, DOI: 10.3866/PKU.WHXB201202212, 2012


5.        Wang, Qiao; Feng, Hui; Zheng, Pengli; The Intracellular Transport and Secretion of Calumenin-1/2 in Living Cells,  PLOS ONE, 7(4), e35344, DOI: 10.1371/journal.pone.0035344, 2012


6.        Long Yan; Qi Ouyang; Hongli Wang; Dose-Response Aligned Circuits in Signaling Systems, PLOS ONE, 7(4),  e34727, DOI: 10.1371/journal.pone.0034727, 2012


7.        Zhang, Changsheng; Lai, Luhua; Automatch: Target-binding protein design and enzyme design by automatic pinpointing potential active sites in available protein scaffolds, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 80(4), 1078-1094, DOI: 10.1002/prot.24009, 2012


8.        Zhu, Xuejun; Si, Guangwei; Deng, Nianpei; Frequency-Dependent Escherichia coli Chemotaxis Behavior, 108(12),  128101,   DOI: 10.1103/PhysRevLett.108.128101, 2012


9.        Wu, Yiran; He, Chong; Gao, Yang; et al; Dynamic Modeling of Human 5-Lipoxygenase-Inhibitor Interactions Helps To Discover Novel Inhibitors, 55(6), 2597-2605, DOI: 10.1021/jm201497k, 2012


10.    Wang, Lin; Hou, Lin; Qian, Minping; et al; Integrating Phosphorylation Network with Transcriptional Network Reveals Novel Functional Relationships , PLOS ONE, 7 (3), e33160, DOI: 10.1371/journal.pone.0033160, 2012


11.    Jia, Chen; Liu, Xu-Feng; Qian, Min-Ping; et al; Kinetic behavior of the general modifier mechanism of Botts and Morales with non-equilibrium binding, JOURNAL OF THEORETICAL BIOLOGY, 296(13-20), DOI: 10.1016/j.jtbi.2011.11.006, 2012


12.    Qi, Yifei; Liang, Huanhuan; Han, Xinping; et al; Sequence Preference of alpha-Helix N-Terminal Tetrapeptide,  PROTEIN AND PEPTIDE LETTERS, 19(3), 345-352, 2012


13.    Zhang, Jia; Chen, Fangjin; Li, Wenliang; et al; 14-3-3 zeta Interacts with Stat3 and Regulates Its Constitutive Activation in Multiple Myeloma Cells , PLOS ONE, 7(1), e29554, DOI: 10.1371/journal.pone.0029554, 2012


14.    He, Chong; Wu, Yiran; Lai, Yongquan; et al; Dynamic eicosanoid responses upon different inhibitor and combination treatments on the arachidonic acid metabolic network,  MOLECULAR BIOSYSTEMS, 8(5), 1585-1594, 2012


15.  Liu, Yingying; Lv, Kaosheng; Li, Zenglong; et al; PACSIN1, a Tau-interacting Protein, Regulates Axonal Elongation and Branching by Facilitating Microtubule Instability, JOURNAL OF BIOLOGICAL CHEMISTRY, 287(47), DOI: 10.1074/jbc.M112.403451, 2012


16.  Rafelski, Susanne M.; Viana, Matheus P.; Zhang, Yi; et al; Mitochondrial Network Size Scaling in Budding Yeast, SCIENCE, 338(6108), 822-824, 10.1126/science.1225720, 2012


17.  Ding Xin-Qiang; Wu Zhi-Yin; Jin Hong-Wei, et al; Characterization and Comparative Analysis of Chemical Libraries for Drug Discovery, ACTA PHYSICO-CHIMICA SINICA, 28(10), 2401-2410, DOI: 10.3866/PKU.WHXB201208241, 2012


18.  He Zhuo-Ran; Wu Tai-Lin; Ouyang Qi , et al; A population-level model from the microscopic dynamics in Escherichia coli chemotaxis via Langevin approximation, CHINESE PHYSICS B, 21(9), 098701,  DOI: 10.1088/1674-1056/21/9/098701, 2012


19.  Wu, Qixi; He, Runsheng; Zhou, Haining, et al;  Cep57, a NEDD1-binding pericentriolar material component, is essential for spindle pole integrity, CELL RESEARCH, 22(9), 1390-1401, DOI: 10.1038/cr.2012.61, 2012


20.  Wang, Quan; Peng, Peichao; Qian, Minping, et al; Hybridization and amplification rate correction for affymetrix SNP arrays, BMC MEDICAL GENOMICS, 5(24), DOI: 10.1186/1755-8794-5-24, 2012


21.  Si, Guangwei; Wu, Tailin; Ouyang, Qi, et al; Pathway-Based Mean-Field Model for Escherichia coli Chemotaxis, PHYSICAL REVIEW LETTERS, 109(4),   048101, DOI: 10.1103/PhysRevLett.109.048101, 2012


22.  Ouyang, Qi; Lai, Luhua; Tang, Chao; Designing the Scientific Cradle for Quantitative Biologists, ACS SYNTHETIC BIOLOGY, 1(7), 254-255, DOI: 10.1021/sb3000386, 2012


23.  Zhuang, Quntao; Gao, Xun; Ouyang, Qi, et al; Dynamical topology and statistical properties of spatiotemporal chaos,  CHAOS, 22(4), 043133, DOI: 10.1063/1.4770065, 2012 


24.  Zhang, Yi; Luo, Chunxiong; Zou, Ke, et al; Single Cell Analysis of Yeast Replicative Aging Using a New Generation of Microfluidic Device, PLOS ONE, 7(11), e48275, DOI: 10.1371/journal.pone.0048275, 2012


25.  Chau, Angela H.; Walter, Jessica M.; Gerardin, Jaline, et al; Designing Synthetic Regulatory Networks Capable of Self-Organizing Cell Polarization, CELL, 151(2), 320-332, DOI: 10.1016/j.cell.2012.08.040, 2012


26.  Zhang Chang-Sheng; Lai Lu-Hua; Protein-Protein Interaction: Prediction, Design, and Modulation, ACTA PHYSICO-CHIMICA SINICA, 28(10), 2363-2380, DOI: 10.3866/PKU.WHXB201209172, 2012


27.  Huang Yong-Qi; Kang Xue; Xia Bin, Mechanism of 3D Domain Swapping for M-pro-C: Clues from Molecular Simulations, ACTA PHYSICO-CHIMICA SINICA, 28(10), 2411-2417, DOI: 10.3866/PKU.WHXB201209072, 2012


28.   Zhou Lu; Jin Feng; Liu Ying, et al;  Isatin Dual Functional Inhibitors: Modulating the Aggregation State and Enzyme Activity of SARS-3CL Proteinase,  ACTA PHYSICO-CHIMICA SINICA, 28(10), 2418-2422, DOI: 10.3866/PKU.WHXB201209143, 2012


29.  Staneva, Iskra; Huang, Yongqi; Liu, Zhirong, et al; Binding of Two Intrinsically Disordered Peptides to a Multi-Specific Protein: A Combined Monte Carlo and Molecular Dynamics Study, PLOS COMPUTATIONAL BIOLOGY, 8(9), e1002682, DOI: 10.1371/journal.pcbi.1002682, 2012


30.  Qi, Yifei; Wang, Qian; Tang, Bo, et al; Identifying Allosteric Binding Sites in Proteins with a Two-State G(o)over-bar Model for Novel Allosteric Effector Discovery, JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 8(8), 2962-2971, DOI: 10.1021/ct300395h, 2012


31.  Xie, Zhengwei; Zhang, Yi; Zou, Ke, et al; Molecular phenotyping of aging in single yeast cells using a novel microfluidic device, AGING CELL, 11(4), 599-606, DOI: 10.1111/j.1474-9726.2012.00821.x, 2012


32.  Yang, Zhao; Gao, Shiyuan; Ouyang, Qi, et al; Scroll wave meandering induced by phase difference in a three-dimensional excitable medium, PHYSICAL REVIEW E , 86(5), 056209, DOI: 10.1103/PhysRevE.86.056209, 2012


33.  Zhang, Yi; Luo, Chunxiong; Zou, Ke, et al; Single Cell Analysis of Yeast Replicative Aging Using a New Generation of Microfluidic Device,  PLOS ONE, 7(11), e48275,  DOI: 10.1371/journal.pone.0048275, 2012


34.  Chen, Shuobing; Zhang, Haoqian; Shi, Handuo, et al; Automated Design of Genetic Toggle Switches with Predetermined Bistability, ACS SYNTHETIC BIOLOGY, 1(7), 284-290, DOI: 10.1021/sb300027y, 2012


35.  Wu, Yiran; He, Chong; Gao, Yang, et al; Dynamic Modeling of Human 5-Lipoxygenase-Inhibitor Interactions Helps To Discover Novel Inhibitors, JOURNAL OF MEDICINAL CHEMISTRY, 55(6), 2597-2605, DOI: 10.1021/jm201497k, 2012


36.  He, Chong; Wu, Yiran; Lai, Yongquan, et al; Dynamic eicosanoid responses upon different inhibitor and    
  combination treatments on the arachidonic acid metabolic network, MOLECULAR BIOSYSTEMS, 8(5),
  1585-1594, DOI: 10.1039/c2mb05503a, 2012