Publications Home > Research > Publications

1.        Yu, HA; Pei, GJ; Ge, P; et al. Predicting kinase functional sites using hierarchical stochastic language modelling STATISTICS AND ITS INTERFACE, 3 (4): 523-531 2010

2.        Zhou, Y; Li, HL; Zhao, R; et al. Astrocytes Express N-Methyl-D-Aspartate Receptor Subunits in Development, Ischemia and Post-Ischemia, NEUROCHEMICAL RESEARCH, 35 (12): 2124-2134 Sp. Iss. SI DEC 2010

3.        Gao, M; She, ZS; Zhou, RH Key Residues that Play a Critical Role in Urea-Induced Lysozyme Unfolding, JOURNAL OF PHYSICAL CHEMISTRY B, 114 (47): 15687-15693 DEC 2 2010

4.        Su, NF; Wang, YF; Qian, MP; et al. Combinatorial regulation of transcription factors and microRNAs, BMC SYSTEMS BIOLOGY, 4: Art. No. 150 NOV 8 2010

5.        Zhang, X; Guo, C; Zhang, W; et al. A folding "framework structure" of Tetrahymena group I intron, JOURNAL OF THEORETICAL BIOLOGY, 267 (4): 495-501 DEC 21 2010

6.        Huang, YQ; Liu, ZR Smoothing molecular interactions: The "kinetic buffer" effect of intrinsically disordered proteins, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 78 (16): 3251-3259 DEC 2010

7.        Huang, YQ; Liu, ZR Nonnative Interactions in Coupled Folding and Binding Processes of Intrinsically Disordered Proteins, PLOS ONE, 5 (11): Art. No. e15375 NOV 4 2010

8.        Cai, XH; Hou, L; Su, NF; et al. Systematic identification of conserved motif modules in the human genome, BMC GENOMICS, 11: Art. No. 567 OCT 14 2010

9.        Wei, DG; Zheng, H; Su, NF; et al. Binding Energy Landscape Analysis Helps to Discriminate True Hits from High-Scoring Decoys in Virtual Screening, JOURNAL OF CHEMICAL INFORMATION AND MODELING, 50 (10): 1855-1864 OCT 2010

10.    Gao, XA; Wang, J; Yu, DQ; et al. Structural basis for the autoprocessing of zinc metalloproteases in the thermolysin family, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107 (41): 17569-17574 OCT 12 2010

11.    Wang, QA; Shen, BR; Zheng, PL; et al. Silkworm Coatomers and Their Role in Tube Expansion of Posterior Silkgland, PLOS ONE, 5 (10): Art. No. e13252 OCT 12 2010

12.    Wang, L; Ouyang, Q Intrinsic noise analysis and stochastic simulation on transforming growth factor beta signal pathway,  CHINESE PHYSICS B, 19 (10): Art. No. 108202 OCT 2010

13.    Fordyce, PM; Gerber, D; Tran, D; et al. De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis, NATURE BIOTECHNOLOGY, 28 (9): 970-976 SEP 2010

14.    Li, B; Shao, B; Yu, CL; et al. A mathematical model for cell size control in fission yeast, JOURNAL OF THEORETICAL BIOLOGY, 264 (3): 771-781 JUN 7 2010

15.    Li, CM; Qi, YF; Teng, X; et al. Maturation Mechanism of Severe Acute Respiratory Syndrome (SARS) Coronavirus 3C-like Proteinase, JOURNAL OF BIOLOGICAL CHEMISTRY, 285 (36): 28134-28140 SEP 3 2010

16.    Wang, Y; Lai, LH Modeling the intracellular dynamics for Vif-APO mediated HIV-1 virus infection, CHINESE SCIENCE BULLETIN, 55 (22): 2329-2340 AUG 2010

17.    Liu, ZR; Zechiedrich, L; Chan, HS Action at Hooked or Twisted-Hooked DNA Juxtapositions Rationalizes Unlinking Preference of Type-2 Topoisomerases, JOURNAL OF MOLECULAR BIOLOGY, 400 (5): 963-982 JUL 30 2010

18.    Huang, YQ; Liu, ZR Intrinsically Disordered Proteins: the New Sequence-Structure-Function Relations ACTA PHYSICO-CHIMICA SINICA, 26 (8): 2061-2072 AUG 2010

19.    Bai, HJ; Lai, LH Protein-Protein Interactions: Interface Analysis, Binding Free Energy Calculation and Interaction Design ACTA PHYSICO-CHIMICA SINICA, 26 (7): 1988-1997 JUL 2010

20.    Gao, M; Yao, XQ; She, ZS; et al. Intermediate Structure and Slow Hydration Water Dynamics in Protein Folding Process ACTA PHYSICO-CHIMICA SINICA, 26 (7): 1998-2006 JUL 2010

21.    Yang, XJ; Liu, XL; Lou, CB; et al. End Effects during the Binding of Protein to Linear DNA Fragments ACTA PHYSICO-CHIMICA SINICA, 26 (7): 2007-2014 JUL 2010

22.    Jiang, XL; Zhou, L; Wu, YR; et al. Modulating the Substrate Specificity of LTA4H Aminopeptidase by Using Chemical Compounds and Small-Molecule-Guided Mutagenesis CHEMBIOCHEM, 11 (8): 1120-1128 MAY 17 2010

23.    Wang, QA; Teng, JL; Shen, BR; et al. Characterization of kinesin-like proteins in silkworm posterior silkgland cells CELL RESEARCH, 20 (6): 713-727 JUN 2010

24.    Jiang, LL; Qi, OY; Tu, YH Quantitative Modeling of Escherichia coli Chemotactic Motion in Environments Varying in Space and Time PLOS COMPUTATIONAL BIOLOGY, 6 (4): Art. No. e1000735 APR 2010

25.    Guo, WQ; Qiao, C; Zhang, ZM; et al. Spontaneous suppression of spiral turbulence based on feedback strategy PHYSICAL REVIEW E, 81 (5): Art. No. 056214 Part 2 MAY 2010

26.    Qi, L; Chao, T; Qi, OY Fluctuation theorem for the mutation process in in vitro evolution, CHINESE PHYSICS B, 19 (4): Art. No. 040202 APR 2010

27.    Luo, XJ; Shen, KY; Luo, CX; et al. An automatic microturbidostat for bacterial culture at constant density BIOMEDICAL MICRODEVICES, 12 (3): 499-503 JUN 2010


28.    Wei, P; Li, CM; Zhou, L; et al. Substrate Binding and Homo-Dimerization of SARS 3CL Proteinase are Mutual Allosteric Effectors ACTA PHYSICO-CHIMICA SINICA, 26 (4): 1093-1098 APR 2010

29.    Peisajovich, SG; Garbarino, JE; Wei, P; et al. Rapid Diversification of Cell Signaling Phenotypes by Modular Domain Recombination SCIENCE, 328 (5976): 368-372 APR 16 2010

30.    Liu, ZR; Zechiedrich, L; Chan, HS Local site preference rationalizes disentangling by DNA topoisomerases PHYSICAL REVIEW E, 81 (3): Art. No. 031902 Part 1 MAR 2010

31.    Lou, CB; Liu, XL; Ni, M; et al. Synthesizing a novel genetic sequential logic circuit: a push-on push-off switch MOLECULAR SYSTEMS BIOLOGY, 6: Art. No. 350 MAR 2010

32.    Si, GW; Zhu, XJ; Kang, YS; et al. Diffusion-based concentration control in microcavities during long time period by programmed syringe pumpsMICROELECTRONIC ENGINEERING, 87 (5-8): 793-797 MAY-AUG 2010

33.    Luo, WJ; Pei, JF; Zhu, YS A fast protein-ligand docking algorithm based on hydrogen bond matching and surface shape complementarity JOURNAL OF MOLECULAR MODELING, 16 (5): 903-913 MAY 2010

34.    Wang, FG; Hou, L; Xu, JF; et al. A robust empirical Bayesian method for detecting differentially expressed genes PROCEEDINGS OF THE 2009 2ND INTERNATIONAL CONFERENCE ON BIOMEDICAL ENGINEERING AND INFORMATICS, VOLS 1-4, : 1824-1828 2009

35.    Luo, CX; Ni, XF; Liu, L; et al. Degassing-Assisted Patterning of Cell Culture Surfaces

36.    Gao, M; Zhu, HQ; Yao, XQ; et al. Water dynamics clue to key residues in protein folding BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 392 (1): 95-99 JAN 29 2010

37.    Qi, YF; Huang, YQ; Liang, HH; et al. Folding Simulations of a De Novo Designed Protein with a beta alpha beta Fold BIOPHYSICAL JOURNAL, 98 (2): 321-329 JAN 20 2010

38.    Yan, L; Wang, HL; Ouyang, Q Deterministic Charaterization of Intrinsic Noise in Chemical
        Reactions CHINESE PHYSICS LETTERS, 27 (1): Art. No. 010501 JAN 2010