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2015年发表论文

 

 

V1 neurons respond to luminance changes faster than contrast changes.

WL Wang, R Li, J Ding, L Tao, DP Li and Y Wang.

Scientific Reports 4, 17173 (2016). [PubMed]

 

 

Estimation of isoform expression in RNA-seq data using a hierarchical Bayesian model.

Wang Z, Wang J, Wu C, Deng M.

J Bioinform Comput Biol. 2015;13(6):1542001. [PubMed]

 

Novel mutations and polymorphisms in the CFTR gene associated with three subtypes of congenital absence of vas deferens.

Yang X, Sun Q, Yuan P, et al.

Fertil Steril. 2015;104(5):1262-1268. [PubMed]

 

Deep Learning for Drug-Induced Liver Injury.

Xu Y, Dai Z, Chen F, Gao S, Pei J, Lai L.

J Chem Inf Model. 2015;55(10):2085-2093. [PubMed]

 

Cryo-EM structure of the activated NAIP2-NLRC4 inflammasome reveals nucleated polymerization.

Zhang L, Chen S, Ruan J, et al.

Science. 2015;350(6259):404-409. [PubMed]

 

CCLasso: correlation inference for compositional data through Lasso.

Fang H, Huang C, Zhao H, Deng M.

Bioinformatics. 2015;31(19):3172-3180. [PubMed]

 

Bacterial chemoreceptors and chemoeffectors.

Bi, S. Y.; Lai, L. H.

Cell. Mol. Life Sci. 2015, 72, (4), 691-708. [PubMed]

 

The free-energy cost of accurate biochemical oscillations.

Cao, Y. S.; Wang, H. L.; Ouyang, Q.; Tu, Y. H.

Nature Physics 2015, 11, (9), 772-+. [PubMed]

 

Molecular dynamic analysis of mutant Y195I alpha-cyclodextrin glycosyltransferase with switched product specificity from alpha-cyclodextrin to gamma-cyclodextrin.

Chen, F. J.; Xie, T.; Yue, Y.; Qian, S. J.; Chao, Y. P.; Pei, J. F.

Journal of Molecular Modeling 2015, 21, (8). [PubMed]

 

A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.

Chen, R.; Shen, L. P.; Wang, D. H.; Wang, F. G.; Zeng, H. Y.; Chen, Z. S.; Peng, Y. B.; Lin, Y. N.; Tang, X.; Deng, M. H.; Yao, N.; Luo, J. C.; Xu, Z. H.; Bai, S. N.

Molecular Plant 2015, 8, (7), 1069-1089. [PubMed]

 

Distinguishing the rates of gene activation from phenotypic variations.

Chen, Y.; Lv, C.; Li, F. T.; Li, T. J.

BMC Syst. Biol. 2015, 9. [PubMed]

 

Horizontal gene transfer in an acid mine drainage microbial community.

Guo, J. T.; Wang, Q.; Wang, X. Q.; Wang, F. M.; Yao, J. X.; Zhu, H. Q.

BMC Genomics 2015, 16. [PubMed]

 

Application of physics in the study of cell polarity during tumor cell migration.

Jing, W.; Gen, Y.; Feng, L.

Acta Physica Sinica 2015, 64, (5). [PubMed]

 

Flexibility and Symmetry of Prokaryotic Genome Rearrangement Reveal Lineage-Associated Core-Gene-Defined Genome Organizational Frameworks.

Kang, Y.; Gu, C. H.; Yuan, L. N.; Wang, Y.; Zhu, Y. M.; Li, X. N.; Luo, Q. B.; Xiao, J. F.; Jiang, D. Q.; Qian, M. P.; Khan, A. A.; Chen, F.; Zhang, Z.; Yu, J.

Mbio 2015, 6, (1); vol 5, e01867, 2014. [PubMed]

 

InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.

Lai, B. B.; Wang, F. M.; Wang, X. Q.; Duan, L. P.; Zhu, H. Q.

BMC Bioinformatics 2015, 16. [PubMed]

 

Reliable cell cycle commitment in budding yeast is ensured by signal integration.

Liu, X. L.; Wang, X.; Yang, X. J.; Liu, S.; Jiang, L. L.; Qu, Y. M.; Hu, L. F.; Ouyang, Q.; Tang, C.

Elife 2015, 4. [PubMed]

 

Energy Landscape Reveals That the Budding Yeast Cell Cycle Is a Robust and Adaptive Multi-stage Process.

Lv, C.; Li, X. G.; Li, F. T.; Li, T. J.

PLoS Comput. Biol. 2015, 11, (3). [PubMed]

 

Trip6 Promotes Dendritic Morphogenesis through Dephosphorylated GRIP1-Dependent Myosin VI and F-Actin Organization.

Lv, K. S.; Chen, L.; Li, Y. J.; Li, Z. L.; Zheng, P. L.; Liu, Y. Y.; Chen, J. G.; Teng, J. L.

J. Neurosci. 2015, 35, (6), 2559-2571. [PubMed]

 

Allosteric sites can be identified based on the residue-residue interaction energy difference.

Ma, X. M.; Qi, Y. F.; Lai, L. H.

Proteins-Structure Function and Bioinformatics 2015, 83, (8), 1375-1384. [PubMed]

 

Differential genetic interactions of yeast stress response MAPK pathways.

Martin, H.; Shales, M.; Fernandez-Pinar, P.; Wei, P.; Molina, M.; Fiedler, D.; Shokat, K. M.; Beltrao, P.; Lim, W.; Krogan, N. J.

Mol. Syst. Biol. 2015, 11, (4). [PubMed]

 

Diverse Ways of Perturbing the Human Arachidonic Acid Metabolic Network To Control Inflammation.

Meng, H.; Liu, Y.; Lai, L. H.

Accounts of Chemical Research 2015, 48, (8), 2242-2250. [PubMed]

 

An Atlas of Network Topologies Reveals Design Principles for Caenorhabditis elegans Vulval Precursor Cell Fate Patterning.

Ping, X. F.; Tang, C.

PLoS One 2015, 10, (6). [PubMed]

 

Pump-free gradient-based micro-device enables quantitative and high-throughput bacterial growth inhibition analysis.

Ran, M.; Wang, Y.; Wang, S. D.; Luo, C. X.

Biomedical Microdevices 2015, 17, (4). [PubMed]

 

From Boolean Network Model to Continuous Model Helps in Design of Functional Circuits.

Shao, B.; Liu, X.; Zhang, D. L.; Wu, J. Y.; Ouyang, Q.

PLoS One 2015, 10, (6). [PubMed]

 

Minimum network constraint on reverse engineering to develop biological regulatory networks.

Shao, B.; Wu, J. Y.; Tian, B. H.; Ouyang, Q.

J. Theor. Biol. 2015, 380, 9-15. [PubMed]

 

Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination.

Shi, H.; Wang, X.; Mo, X. R.; Tang, C.; Zhong, S. W.; Deng, X. W.

Proc. Natl. Acad. Sci. U. S. A. 2015, 112, (12), 3817-3822. [PubMed]

 

A mechanism for graded, dynamically routable current propagation in pulse-gated synfire chains and implications for information coding.

Sornborger, A. T.; Wang, Z.; Tao, L.

J. Comput. Neurosci. 2015, 39, (2), 181-195. [PubMed]

 

Extracellular calumenin suppresses ERK1/2 signaling and cell migration by protecting fibulin-1 from MMP-13-mediated proteolysis.

Wang, Q.; Shen, B.; Chen, L.; Zheng, P.; Feng, H.; Hao, Q.; Liu, X.; Liu, L.; Xu, S.; Chen, J.; Teng, J.

Oncogene 2015, 34, (8), 1006-1018. [PubMed]

 

Functional genomic analysis of Hawaii marine metagenomes.

Wang, X. Q.; Wang, Q.; Guo, X.; Liu, L. Y.; Guo, J. T.; Yao, J. T.; Zhu, H. Q.

Science Bulletin 2015, 60, (3), 348-355. [PubMed]

 

Studies of Antibiotic Resistance of Beta-Lactamase Bacteria under Different Nutrition Limitations at the Single-Cell Level.

Wang, Y.; Ran, M.; Wang, J.; Ouyang, Q.; Luo, C. X.

PLoS One 2015, 10, (5). [PubMed]

 

Low-Rank and Sparse Matrix Decomposition for Genetic Interaction Data.

Wang, Y. S.; Yang, D. J.; Deng, M. H.

Biomed Research International 2015. [PubMed]

 

Modeling the mitotic regulatory network identifies highly efficient anti-cancer drug combinations.

Wu, Y. R.; Zhuo, X. L.; Dai, Z. W.; Guo, X.; Wang, Y.; Zhang, C. M.; Lai, L. H.

Molecular Biosystems 2015, 11, (2), 497-505. [PubMed]

 

Early Telomerase Inactivation Accelerates Aging Independently of Telomere Length.

Xie, Z. W.; Jay, K. A.; Smith, D. L.; Zhang, Y.; Liu, Z. R.; Zheng, J. S.; Tian, R. L.; Li, H.; Blackburn, E. H.

Cell 2015, 160, (5). [PubMed]

 

Design, Construction, and Characterization of a Set of Biosensors for Aromatic Compounds.

Xue, H. R.; Shi, H. L.; Yu, Z.; He, S. X.; Liu, S. Y.; Hou, Y. H.; Pan, X. J.; Wang, H.; Zheng, P.; Cui, C.; Viets, H.; Liang, J.; Zhang, Y. H.; Chen, S. B.; Zhang, H. Q. M.; Ouyang, Q.

Acs Synthetic Biology 2014, 3, (12), 1011-1014. [PubMed]

 

Systematic analysis of asymmetric partitioning of yeast proteome between mother and daughter cells reveals "aging factors" and mechanism of lifespan asymmetry.

Yang, J.; McCormick, M. A.; Zheng, J. S.; Xie, Z. W.; Tsuchiya, M.; Tsuchiyama, S.; El-Samad, H.; Qi, O. Y.; Kaeberlein, M.; Kennedy, B. K.; Li, H.

Proc. Natl. Acad. Sci. U. S. A. 2015, 112, (38), 11977-11982. [PubMed]

 

A novel microfluidic platform for studying mammalian cell chemotaxis in different oxygen environments under zero-flow conditions.

Yang, W.; Luo, C. X.; Lai, L. H.; Ouyang, Q.

Biomicrofluidics 2015, 9, (4). [PubMed]

 

CD4 T-cell transcriptome analysis reveals aberrant regulation of STAT3 and Wnt signaling pathways in rheumatoid arthritis: evidence from a case-control study.

Ye, H.; Zhang, J.; Wang, J.; Gao, Y. Y.; Du, Y.; Li, C.; Deng, M. H.; Guo, J. P.; Li, Z. G.

Arthritis Res. Ther. 2015, 17. [PubMed]

 

Both piston-like and rotational motions are present in bacterial chemoreceptor signaling.

Yu, D. Q.; Ma, X. M.; Tu, Y. H.; Lai, L. H.

Sci. Rep. 2015, 5. [PubMed]

 

Binding cavities and druggability of intrinsically disordered proteins.

Zhang, Y. G.; Cao, H. Q.; Liu, Z. R.

Protein Sci. 2015, 24, (5), 688-705. [PubMed]

 

Mutation-induced protein interaction kinetics changes affect apoptotic network dynamic properties and facilitate oncogenesis.

Zhao, L. J.; Sun, T. L.; Pei, J. F.; Ouyang, Q.

Proc. Natl. Acad. Sci. U. S. A. 2015, 112, (30), E4046-E4054. [PubMed]

 

 

A systematic analysis of asymmetric partitioning of yeast proteome between mother and daughter cells reveals novel “aging factors” and mechanism of lifespan asymmetry.

J Yang, M McCormick, JS Zheng, ZW Xie, M Tsuchiya, S Tsuchiyama, H El-Samad, Qi Ouyang, B K Kennedy* and H Li*.

PNAS, (2015) 11977-82. [PubMed]

 

Cryo-EM Structures of the Activated PrgJ/NAIP2/NLRC4 Inflammasome Complexes.

LM Zhang, SB Chen, JB Ruan, JY Wu, QYin, L David, A Lu, WL Wang, C Marks, Qi Ouyang, XZ Zhang, YD Mao*, and H Wu.

Science, 350, (2015), 404-409. [PubMed]

 

Designing a stochastic genetic switch by coupling chaos and bistability.

X Zao, Qi Ouyang, HL Wang.

Chaos, 25, 113112 (2015). [PubMed]

 

Oscillatory stress stimulation uncovers an Achilles’ heel of the yeast MAPK signaling network.

Amir Mitchell, Wei, P*, Wendell A Lim*.

Science 2015; 350, 1379-1383. [PubMed]

 

Consistent rationalization of type-2 topoisomerases' unknotting, decatenating, supercoil-relaxing actions and their scaling relation.

Zhirong Liu* and Hue Sun Chan*.

J. Phys.: Condens. Matter. 27 (35), 354103/1-13 (2015). [PubMed]

 

The application of physics in the study of cell polarity during tumor cell migration.

Wang, J, G. Yang, F Liu*.

Acta Phys. Sin. 2015 64 (5): 058707, Invited Review. [PubMed]

 

Calumenin and fibulin-1 on tumor metastasis: Implications for pharmacology.

Zheng Pengli, Qiao Wang, Junlin Tenga, Jianguo Chen*.

Pharmacological Research 2015 99:11-15. Invited Review. [PubMed]