# This Makefile will build and generate executable of program used by the InteMAP pipeline.
# The program implicate of assembly-merging-algorithm.


.PHONY : all
TARGET = ../../mergeassembly
OBJ = mergeassembly.o bank.o readincontig.o flib.o contig_matches2.o readmappings.o readvalidate.o ana_mapping.o dealunmap.o anamergeoverlap.o
$(TARGET): $(OBJ)
	g++ -O3 $(OBJ) -o $(TARGET)

mergeassembly.o: bank.h readincontig.h readmappings.h readvalidate.h ana_mapping.h dealunmap.h anamergeoverlap.h
bank.o: contig_matches2.h
readincontig.o: bank.h
readmappings.o: bank.h
readvalidate.o: bank.h
ana_mapping.o: bank.h flib.h
dealunmap.o: flib.h
anamergeoverlap.o: bank.h flib.h
flib.o: flib.h
contig_matches2.o: 
