A de novo metagenomic assembly program for shotgun DNA reads

Binbin Lai^1,2,3, Ruogu Ding^1,2, Yang Li^1,2, Liping Duan⁴ and Huaiqiu Zhu^1,2,3

¹State Key Lab for Turbulence and Complex Systems and Department of Biomedical Engineering, Peking University, Beijing 100871, China
²Center for Theoretical Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China
³Center for Protein Science, Peking University, Beijing 100871, China
⁴Department of Gastroenterology, Peking University Third Hospital, Beijing 100191, China

Download source code: MAP.tar.gz (updated on 2012/11/8)
The MANUAL, which will be included in your download, may be previewed here

We compare MAP with Celera, Phrap and Newbler tools on simulated metagenomic datasets. Download the data here.

Please contact Binbin Lai: laibinbin@ctb.pku.edu.cn