# hmmsearch :: search profile(s) against a sequence database # HMMER 3.1b2 (February 2015); http://hmmer.org/ # Copyright (C) 2015 Howard Hughes Medical Institute. # Freely distributed under the GNU General Public License (GPLv3). # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # query HMM file: /home/hqzhu_pkuhpc/lustre1/lsyang/Pfam/Sigma.hmm # target sequence database: /home/hqzhu_pkuhpc/lustre1/lsyang/2016Sigma/process/sequence/sigmafactor.nonredundant.fa # - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query: Sigma70_r1_1 [M=82] Accession: PF03979.12 Domain search space (domZ): 4613 [number of targets reported over threshold] Query: Sigma70_r1_2 [M=82] Accession: PF03979.13 Domain search space (domZ): 4667 [number of targets reported over threshold] # CPU time: 14.80u 0.07s 00:00:14.87 Elapsed: 00:00:14.88 # Mc/sec: 84.13 // [ok]