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155. Qi Liu, Nan Sheng, Zhiwen Zhang, Chenjun He, Yao Zhao, Haoyuan Sun, Jianguo Chen, Xiaojing Yang, and Chao Tang. "Initial nutrient condition determines the recovery speed of quiescent cells in fission yeast." Heliyon (2024).
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154. Yixuan Chen, Guoye Guan, Lei-Han Tang, and Chao Tang. "Balancing reaction-diffusion network for cell polarization pattern with stability and asymmetry." arXiv preprint arXiv:2401.07227 (2024).
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153. Xiaohong Peng, Huixia Ren, Lu Yang, Shiyan Tong, Renjie Zhou, Haochen Long, Yunxiang Wu et al. "Readily releasable β cells with tight Ca2+–exocytosis coupling dictate biphasic glucose-stimulated insulin secretion." Nature Metabolism (2024): 1-16.
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152. Ning Yang, Chao Tang, and Yuhai Tu, “Stochastic Gradient Descent Introduces an Effective Landscape-Dependent Regularization Favoring Flat Solutions”, Physical Review Letters 130, 237101(2023).
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151. Guoye Guan, Zhongying Zhao, and Chao Tang. "Delineating mechanisms and design principles of Caenorhabditis elegans embryogenesis using in toto high-resolution imaging data and computational modeling." Computational and Structural Biotechnology Journal (2022).
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150.Guoye Guan, Zhongying Zhao, and Chao Tang. "Delineating mechanisms and design principles of Caenorhabditis elegans embryogenesis using in toto high-resolution imaging data and computational modeling."Computational and Structural Biotechnology Journal
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149. Jingxiang Shen, Feng Liu, and Chao Tang. "Scaling dictates the decoder structure." Science Bulletin 67, no. 14 (2022): 1486-1495.
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148. Huixia Ren, Yanjun Li, Chengsheng Han, Yi Yu, Bowen Shi, Xiaohong Peng, Tianming Zhang, Xiaojing Yang, Sneppen Kim, Liangyi Chen, Chao Tang . "Pancreatic α and β cells are globally phase-locked." Nature Communications 13, no. 1 (2022): 1-16.
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147. Xiangyu Kuang, Guoye Guan, Chao Tang, and Lei Zhang. "MorphoSim: An efficient and scalable phase-field framework for accurately simulating multicellular morphologies." NPJ Systems Biology and Applications 9, no. 1 (2023): 6.
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146.Ye Lei, Zhiyun Zhao, Huixia Ren, Wencui Wang, Wenzhong Zhou, Sichang Zheng, Rulai Han, Jie zhang, Haorong Li, Zhihan Wan, Chao Tang, Shouyue Sun, Weiqing Wang, GUang Ning. "A multi-classifier system to identify and subtype congenital adrenal hyperpla
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145. Du Yuanyuan, Zhen Liang, Shusen Wang, Dong Sun, Xiaofeng Wang, Soon Yi Liew, Shuaiyao Lu et al. "Human pluripotent stem-cell-derived islets ameliorate diabetes in non-human primates." Nature Medicine 28, no. 2(2022) :2-282.
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144. Yang Zhenghao, Xiaochan Xu, Chan Gu, Alexander Valentin Nielsen, Guokai Chen, Fan Guo, Chao Tang, and Yang Zhao. "Chemical Pretreatment Activated a Plastic State Amenable to Direct Lineage Reprogramming." Frontiers in cell and developmental biology 1
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143. Yuan Yuan, Huixia Ren, Yanjun Li, Shanshan Qin, Xiaojing Yang, and Chao Tang. "Cell-to-cell variability in inducible Caspase9-mediated cell death." Cell death & disease 13, no. 1 (2022): 1-11.
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142. Sun Zhi, Weijia Wei, Mingyue Zhang, Wenjia Shi, Yeqing Zong, Yihua Chen, Xiaojing Yang, Bo Yu, Chao Tang, and Chunbo Lou. "Synthetic robust perfect adaptation achieved by negative feedback coupling with linear weak positive feedback." Nucleic acids
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141. Kuang Xiangyu, Guoye Guan, Ming-Kin Wong, Lu-Yan Chan, Zhongying Zhao, Chao Tang, and Lei Zhang. "Computable early Caenorhabditis elegans embryo with a phase field model." PLOS Computational Biology 18, no. 1 (2022): e1009755.
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140. Zhang Junwei, Xiaohong Peng, Yunxiang Wu, Huixia Ren, Jingfu Sun, Shiyan Tong, Tianyan Liu et al. "Red‐and Far‐Red‐Emitting Zinc Probes with Minimal Phototoxicity for Multiplexed Recording of Orchestrated Insulin Secretion." Angewandte Chemie 133, no
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139. Guan Guoye, Ming-Kin Wong, Zhongying Zhao, Lei-Han Tang, and Chao Tang. "Volume segregation programming in a nematode's early embryogenesis." Physical Review E 104, no. 5 (2021): 054409.
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138.Guan Guoye, Wong Ming-Kin, Chan Lu-Yan, Sze Ho Vincy Wing, An Xiaomeng, Zhao Zhongying, and Chao Tang. "Investigating spatio-temporal cellular interactions in embryonic morphogenesis by 4D nucleus tracking and systematic comparative analysis—Taking ne
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137. Liu Yuxuan, Qianyi Li, Chao Tang, Shanshan Qin, and Yuhai Tu. "Short-Term Plasticity Regulates Both Divisive Normalization and Adaptive Responses in Drosophila Olfactory System." Frontiers in computational neuroscience (2021): 92.
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136. Jiao Miao, Guoye Guan, Chao Tang, "Spontaneous cell internalization of a spatially-confined proliferating blastomere: A mechanical interpretation on worm gastrulation", arXiv:2105.05795 (2021)
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135. Xu Xiaochan, Wei Yang, Binghui Tian, Xiuwen Sui, Weilai Chi, Yi Rao, and Chao Tang. "Quantitative investigation reveals distinct phases in Drosophila sleep." Communications biology 4, no. 1 (2021): 1-11.
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134. Cao Jianfeng, Guoye Guan, Vincy Wing Sze Ho, Ming-Kin Wong, Lu-Yan Chan, Chao Tang, Zhongying Zhao, and Hong Yan. "Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation." Nature communic
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133. Guoye Guan, Lei-Han Tang and Chao Tang, "Reconstructing the multicellular structure of a developing metazoan embryo with repulsion-attraction model and cell-cell connection atlas in vivo", Journal of Physics: Conference Series, 012020 (2020).
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132. Yimiao Qu, Jun Jiang, Xiang Liu, Xiaojing Yang, Chao Tang, "Non-epigenetic mechanisms enable short memories of the environment for cell cycle commitment", bioRxiv, 250704 (2020).
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131. Jun Jiang, Yimiao Qu, Xiang Liu, Chao Tang, Ping Wei, "Antagonistic crosstalk fine-tunes sensitivities of IRE1 and PERK signaling during unfolded protein response", bioRxiv, 243527 (2020).
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130. Kurt M. Schmoller, Michael C. Lanz, Jacob Kim, Mardo Koivomagi, Yimiao Qu, Chao Tang, Igor V. Kukhtevich, Robert Schneider, Fabian Rudolf, David F. Moreno, Martí Aldea, Rafael Lucena, Doug Kellogg, Jan M. Skotheim, "Whi5 is diluted and protein synth
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129. Yimiao Qu, Jun Jiang, Xiaojing Yang, and Chao Tang, "Protocol for Titrating Gene Expression Levels in Budding Yeast", STAR Protocols, 2020.100082 (2020).
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128. Guoye Guan, Meichen Fang, Ming-Kin Wong, et al, "Multilevel regulation of muscle-specific transcription factor hlh-1 during Caenorhabditis elegans embryogenesis", Development Genes and Evolution, 10.1007 (2020).
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127. Dapeng Ju, Wei Zhang, et al. "Chemical perturbations reveal that RUVBL2 regulates the circadian phase in mammals", Science Translational Medicine, 12, (2020): eaba0769 .
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126. Huixia Ren, Mengdi Zhao, Bo Liu, Ruixiao Yao, Qi Liu, Zhipeng Ren, Zirui Wu, Zongmao Gao, Xiaojing Yang, Chao Tang, "Cellbow: a robust customizable cell segmentation program", Quantitative Biology 8(3),(2020): 245–255 .
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125. Yao Zhao, Dedi Wang, Zhiwen Zhang, Ying Lu, Xiaojing Yang, Qi Ouyang, Chao Tang, and Fangting Li, "Critical slowing down and attractive manifold: A mechanism for dynamic robustness in the yeast cell-cycle process.", Physical Review E 101, (2020): 042
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124. Junjun Li, Lu Zhang, et al. “Circulating re-entrant waves promote maturation of hiPSC-derived cardiomyocytes in self-organized tissue ring.”, Communications Biology, (2020): 3 122.
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123. Binghui Tian, Guoye Guan, Lei-Han Tang and Chao Tang, "Why and how the nematode’s early embryogenesis can be precise and robust: a mechanical perspective", Physical biology 17, (2020): 026001.
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122. Lu Zhang, Junjun Li, Li Liu, Chao Tang, "Analysis of circulating Waves in tissue Rings derived from Human induced pluripotent Stem cells", Scientific Reports, (2020): 10:2984 .
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121. Chang Chang, Simone Bianco, Ashley Acevedo, Chao Tang, Raul Andino, "Genetic interactions shaping evolutionary trajectories in an RNA virus population", bioRxiv, 908129 (2020).
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120. Jingxiang Shen, Feng Liu, Yuhai Tu, Chao Tang, “Finding gene network topologies for given biological function with recurrent neural network”, Nature communication, (2021): 12:3125 .
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119. Yimiao Qu, Jun Jiang, Xiang Liu, Ping Wei, Xiaojing Yang, and Chao Tang “Cell Cycle Inhibitor Whi5 Records Environmental Information to Coordinate Growth and Division in Yeast”，Cell Reports 29, (2019): 987–994.
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117. Guoye Guan, Ming-Kin Wong, Vincy Wing Sze Ho, Xiaomeng An, Lu-Yan Chan, Binghui Tian, Zhiyuan Li, Leihan Tang, Zhongying Zhao, Chao Tang,“System-Level Quantification and Phenotyping of Early Embryonic Morphogenesis of Caenorhabditis elegans”,bioRxiv,
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116. Shanshan Qin, Qianyi Li, Chao Tang, and Yuhai Tu, “Optimal compressed sensing strategies for an array of nonlinear olfactory receptor neurons with and without spontaneous activity,” PNAS, (2019): 1906571116.
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115. Lingxia Qiao, Wei Zhao, Chao Tang, Qing Nie, Lei Zhang, "Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation", Cell Systems 9, 271–285 (2019).
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114. Mingyue Zhang and Chao Tang, “Bi-functional biochemical networks,” Physical biology 16, 016001 (2019).
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113. Xin Wang, Kang Xia, Xiaojing Yang, and Chao Tang, “Growth strategy of microbes on mixed carbon sources,” Nature communications 10, 1279 (2019).
862.23 kb
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112. Ting Zhao, Yao Fu, et al. "Single-cell RNA-Seq reveals dynamic early embryonic-like programs during chemical reprogramming", Cell Stem Cell, 2018, 23(1): 31-45. (2008).
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111. Zongmao Gao, Haoyuan Sun, Shanshan Qin, Xiaojing Yang, and Chao Tang, “A systematic study of the determinants of protein abundance memory in cell lineage,” Science Bulletin 63, 1051–1058 (2018).
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110. Leqian Yu, Junjun Li, Jiayin Hong, Yasuhiro Takashima, Nanae Fujimoto, Minako Nakajima, Akihisa Yamamoto, Xiaofeng Dong, Yujiao Dang, Yu Hou, et al., “Low cell-matrix adhesion reveals two subtypes of human pluripotent stem cells,” Stem cell reports 1
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109. Shanshan Qin and Chao Tang, “Early-warning signals of critical transition: Effect of extrinsic noise,” Physical Review E 97, 032406 (2018).
485.07 kb
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108. Zongmao Gao, Siheng Chen, Shanshan Qin, and Chao Tang, “Network motifs capable of decoding transcription factor dynamics,” Scientific reports 8, 3594 (2018).
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107. Peijia Yu, Qing Nie, Chao Tang, and Lei Zhang, “Nanog induced intermediate state in regulating stem cell differentiation and reprogramming,” BMC systems biology 12, 22 (2018).
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106. Li-Hui Cao, Dong Yang, Wei Wu, Xiankun Zeng, Bi-Yang Jing, Meng-Tong Li, Shanshan Qin, Chao Tang, Yuhai Tu, and Dong-Gen Luo, “Odor-evoked inhibition of olfactory sensory neurons drives olfactory perception in drosophila,” Nature communications 8, 1
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105. Zhi-Bo Zhang, Qiu-Yue Wang, Yu-Xi Ke, Shi-Yu Liu, Jian-Qi Ju, Wendell A Lim, Chao Tang, and Ping Wei, “Design of tunable oscillatory dynamics in a synthetic nf-κb signaling circuit,” Cell systems 5, 460–470 (2017).
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104. Wenjia Shi, Wenzhe Ma, Liyang Xiong, Mingyue Zhang, and Chao Tang, “Adaptation with transcriptional regulation,” Scientific reports 7, 42648 (2017).
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103. Huan Hu, Hongmin Zhang, Sheng Wang, Miao Ding, Hui An, Yingping Hou, Xiaojing Yang, Wensheng Wei, Yujie Sun, and Chao Tang, “Live visualization of genomic loci with bifc-tale,” Scientific reports 7, 40192 (2017).
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102. Liyang Xiong, Wenjia Shi, and Chao Tang, “Adaptation through proportion,” Physical biology 13, 046007 (2016).
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101. Domitilla Del Vecchio, Douglas Densmore, Hana El-Samad, D Ingber, A Khalil, S Kosuri, and C Tang, “What have the principles of engineering taught us about biological systems?” Cell Systems 2, 5–7 (2016).
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100. Xianfeng Ping and Chao Tang, “An atlas of network topologies reveals design principles for caenorhabditis elegans vulval precursor cell fate patterning,” PloS one 10, e0131397 (2015).
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99. Hui Shi, Xin Wang, Xiaorong Mo, Chao Tang, Shangwei Zhong, and Xing Wang Deng, “Arabidopsis det1 degrades hfr1 but stabilizes pif1 to precisely regulate seed germination,” Proceedings of the National Academy of Sciences 112, 3817–3822 (2015).
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98. Xili Liu, Xin Wang, Xiaojing Yang, Sen Liu, Lingli Jiang, Yimiao Qu, Lufeng Hu, Qi Ouyang, and Chao Tang, “Reliable cell cycle commitment in budding yeast is ensured by signal integration,” Elife 4, e03977 (2015).
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97. Dan Lu, Jennifer Y Hsiao, Norman E Davey, Vanessa A Van Voorhis, Scott A Foster, Chao Tang, and David O Morgan, “Multiple mechanisms determine the order of apc/c substrate degradation in mitosis,” J Cell Biol 207, 23–39 (2014).
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96. Chang Chang and Chao Tang, “Community detection for networks with unipartite and bipartite structure,” New Journal of Physics 16, 093001 (2014).
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95. Adi Stern, Simone Bianco, Ming Te Yeh, Caroline Wright, Kristin Butcher, Chao Tang, Rasmus Nielsen, and Raul Andino, “Costs and benefits of mutational robustness in rna viruses,” Cell reports 8, 1026–1036 (2014).
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