Integrated Prokaryotic Alternative Transcript Unit Predictor
Cheng Yang
1,4, Longshu Yang
2, Xiaobin Zheng
5, Qi Wang
1 and Huaiqiu Zhu
1,2,3
1Department of Biomedical Engineering and State Key Lab for Turbulence and Complex Systems, Peking University, Beijing 100871, China
2Center for Quantitative Biology, Peking University, Beijing 100871, China
3Center for Protein Science, Peking University, Beijing 100871, China
4The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, USA
5Department of Embryology, Carnegie Institution for Science, 3520 San Martin Drive, Baltimore, MD 21218, USA
Introduction
We present a integrated Predictor for prokaryotic alternative transcript (PROPER). It is a stand-alone and cross-platform tool which has the following main features:
Predicting the operon, promoter, terminator, and alternative transcription unit in the entire prokaryotic genome;
Graphics visualization of the above results;
Gene queries and other related functions.
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