Publication

2021

  1. Linyu Zuo, Jiawei Ding, and Zhi Qi#. Single-molecule imaging of EWS-FLI1 condensates assembling and searching on DNA. Submission to JoVE (Journal of Visualized Experiments) (Invited Review).
  2. Jiangchuan Shen*, Yiling Zhao*, Nhung Tuyet Pham*, Yuxi Li, Yixiang Zhang, 4Jonathan Trinidad, Grzegorz Ira, Zhi Qi#, Hengyao Niu#. Deciphering the mechanism of processive ssDNA digestion by the Dna2-RPA ensemble. Under review by Nature Communications.
  3. Linyu Zuo, Luhua Lai#, and Zhi Qi#. Single-molecule imaging of the phase separation-modulated DNA compaction to study transcriptional repression. Submission to MiMB (Invited Review).
  4. Zuo, L., Zhang, G., Massett, M., Cheng, J., Guo, Z., Wang, L., Gao, Y., Li, R., Huang, X.#, Li, P.#, Qi, Z.# (2021). Loci-specific phase separation of FET fusion oncoproteins promotes gene transcription. Nature Communications 12, 1491. [The editors at Nature Communications have put together an Editors’ Highlights webpage of recent research called “From molecules and cells to organisms” and our paper was chosen to be featured (www.nature.com/collections/bbcaeejggj).]

2020

  1. Xu, M.Y., Zhang, C., Zhang, C.J., Zhao, Y.L., Qi, Z., Fan, C.H., Chao, J., and Wei, B. (2020). DNA Origami Nanostructures with Scaffolds Obtained from Rolling Circle Amplification. Acs Mater Lett2, 1322-1327.

2019

  1. Steinfeld, J.B., Belan, O., Kwon, Y., Terakawa, T., Al-Zain, A., Smith, M.J., Crickard, J.B., Qi, Z., Zhao, W.X., Rothstein, R., et al. (2019). Defining the influence of Rad51 and Dmc1 lineage-specific amino acids on genetic recombination. Genes Dev 33, 1191-1207.
  2. Zhou, H., Song, Z., Zhong, S., Zuo, L., Qi, Z.#, Qu, L.-J.#, and Lai, L.# (2019). Mechanism of DNA-Induced Phase Separation for Transcriptional Repressor VRN1. Angewandte Chemie (International ed in English) 58, 4858-4862.

2018

  1. Li, S.Q., et al., Qi, Z., and Feng J.X., Li, Q. (2018). Rtt105 functions as a chaperone for Replication Protein A to preserve genome stability. EMBO J. 37(17).

2017

  1. Zhao, Y.L., Jiang, Y.Z., and Qi, Z.# (2017). Visualizing biological reaction intermediates with DNA curtains. Journal of Physics D: Applied Physics 50, 153001-153016 (Invited Review).
  2. Lee, J.Y., Steinfeld, J.B., Qi, Z., Kwon, Y., Sung, P., and Greene, E.C. (2017). Sequence imperfections and base triplet recognition by the Rad51/RecA family of recombinases. J. Biol. Chem., M117. 787614.

2016

  1. Lee, J.Y., Qi, Z., and Greene, E.C. (2016). ATP hydrolysis Promotes Duplex DNA Release by the RecA Presynaptic Complex. J Biol Chem 291, 22218-22230.
  2. Qi, Z., and Greene, E.C. (2016). Visualizing recombination intermediates with single-stranded DNA curtains. Methods 105, 62-74.

2015

  1. Lee, J.Y., Terakawa, T.*, Qi, Z.*, Steinfeld, J.B., Redding, S., Kwon, Y., Gaines, W.A., Zhao, W., Sung, P., and Greene, E.C. (2015). Base triplet stepping by the Rad51/RecA family of recombinases. Science 349, 977-981.
  2. Qi, Z., Redding, S., Lee, J.Y., Gibb, B., Kwon, Y., Niu, H.Y., Gaines, W.A., Sung, P., and Greene, E.C. (2015). DNA Sequence Alignment by Microhomology Sampling during Homologous Recombination. Cell 160, 856-869.

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