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发表文章
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94. Ning Yin, Wenzhe Ma, Jianfeng Pei, Qi Ouyang, Chao Tang, and Luhua Lai, “Synergistic and antagonistic drug combinations depend on network topology,” PloS one 9, e93960 (2014).
808.75 kb
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93. Zhiyuan Li, Simone Bianco, Zhaoyang Zhang, and Chao Tang, “Generic properties of random gene regulatory networks,” Quantitative Biology 1, 253–260 (2013).
409.84 kb
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92. Xiaojing Yang, Kai-Yeung Lau, Volkan Sevim, and Chao Tang, “Design principles of the yeast g1/s switch,” PLoS biology 11, e1001673 (2013).
2718.65 kb
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91. Xiaojing Yang, Anna Payne-Tobin Jost, Orion D Weiner, and Chao Tang, “A light-inducible organelle-targeting system for dynamically activating and inactivating signaling in budding yeast,” Molecular biology of the cell 24, 2419–2430 (2013).
2231.38 kb
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90. Jian Shu, Chen Wu, Yetao Wu, Zhiyuan Li, Sida Shao, Wenhui Zhao, Xing Tang, Huan Yang, Lijun Shen, Xiaohan Zuo, et al., “Induction of pluripotency in mouse somatic cells with lineage specifiers,” Cell 153, 963–975 (2013).
3564.49 kb
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89. Connie M Lee, Siyuan Gong, Chao Tang, and Wendell A Lim, “Bridging cross-cultural gaps in scientific exchange through innovative team challenge workshops,” Quantitative biology 1, 3 (2013).
375.07 kb
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88. Michael Q Zhang and Chao Tang, “Qb: A new inter-and multi-disciplinary forum for modeling, engineering and understanding life,” (2013).
39.83 kb
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87. Wendell A Lim, Connie M Lee, and Chao Tang, “Design principles of regulatory networks: searching for the molecular algorithms of the cell,” Molecular cell 49, 202–212 (2013).
1127.96 kb
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86. Angela H Chau, Jessica M Walter, Jaline Gerardin, Chao Tang, and Wendell A Lim, “Designing synthetic regulatory networks capable of self-organizing cell polarization,” Cell 151, 320–332 (2012).
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85. Qi Ouyang, Luhua Lai, and Chao Tang, “Designing the scientific cradle for quantitative biologists,” (2012).
4613.38 kb
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84. Colm J Ryan, Assen Roguev, Kristin Patrick, Jiewei Xu, Harlizawati Jahari, Zongtian Tong, Pedro Beltrao, Michael Shales, Hong Qu, Sean R Collins, et al., “Hierarchical modularity and the evolution of genetic interactomes across species,” Molecular ce
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83. Yuan Tian, Chunxiong Luo, Yuheng Lu, Chao Tang, and Qi Ouyang, “Cell cycle synchronization by nutrient modulation,” Integrative Biology 4, 328–334 (2012).
2374.07 kb
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82. Lin Hou, Lin Wang, Minping Qian, Dong Li, Chao Tang, Yunping Zhu, Minghua Deng, and Fangting Li, “Modular analysis of the probabilistic genetic interaction network,” Bioinformatics 27, 853–859 (2011).
387.28 kb
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81. Zhiyuan Li, Ming Ni, Jikun Li, Yuping Zhang, Qi Ouyang, and Chao Tang, “Decision making of the p53 network: Death by integration,” Journal of theoretical biology 271, 205–211 (2011).
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80. Lu Wang, Luhua Lai, Qi Ouyang, and Chao Tang, “Flux balance analysis of ammonia assimilation network in e. coli predicts preferred regulation point,” PloS one 6, e16362 (2011).
451.09 kb
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79. A Trusina and C Tang, “The unfolded protein response and translation attenuation: a modelling approach,” Diabetes, Obesity and Metabolism 12, 27–31 (2010).
660.73 kb
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78. Wenzhe Ma, Ala Trusina, Hana El-Samad, Wendell A Lim, and Chao Tang, “Defining network topologies that can achieve biochemical adaptation,” Cell 138, 760–773 (2009).
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77. Huanhuan Liang, Hao Chen, Keqiang Fan, Ping Wei, Xianrong Guo, Changwen Jin, Chen Zeng, Chao Tang, and Luhua Lai, “De novo design of a beta alpha beta motif.” Angewandte Chemie (International ed. in English) 48, 3301–3303 (2009).
1141.04 kb
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76. Zhaoqian Steven Xie and Chao Tang, “A more robust boolean model describing inhibitor binding,” Frontiers of Electrical and Electronic Engineering in China 3, 371–375 (2008).
88.23 kb
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75. Ala Trusina, Feroz R Papa, and Chao Tang, “Rationalizing translation attenuation in the network architecture of the unfolded protein response,” Proceedings of the National Academy of Sciences 105, 20280–20285 (2008).
720.26 kb
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74. Kun Yang, Hongjun Bai, Qi Ouyang, Luhua Lai, and Chao Tang, “Finding multiple target optimal intervention in disease-related molecular network,” Molecular systems biology 4, 228 (2008).
2598.34 kb
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73. Tony Yu-Chen Tsai, Yoon Sup Choi, Wenzhe Ma, Joseph R Pomerening, Chao Tang, and James E Ferrell, “Robust, tunable biological oscillations from interlinked positive and negative feedback loops,” Science 321, 126–129 (2008).
1803.9 kb
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72. Morten Kloster and Chao Tang, “Scumble: a method for systematic and accurate detection of codon usage bias by maximum likelihood estimation,” Nucleic acids research 36, 3819–3827 (2008).
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71. Kai-Yeung Lau, Surya Ganguli, and Chao Tang, “Function constrains network architecture and dynamics: A case study on the yeast cell cycle boolean network,” Physical Review E 75, 051907 (2007).
747.31 kb
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70. Kun Yang, Wenzhe Ma, Huanhuan Liang, Qi Ouyang, Chao Tang, and Luhua Lai, “Dynamic simulations on the arachidonic acid metabolic network,” PLoS computational biology 3, e55 (2007).
436.75 kb
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69. Je-Luen Li, Roberto Car, Chao Tang, and Ned S Wingreen, “Hydrophobic interaction and hydrogen-bond network for a methane pair in liquid water,” Proceedings of the National Academy of Sciences 104, 2626–2630 (2007).
908.68 kb
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68. Wenzhe Ma, Luhua Lai, Qi Ouyang, and Chao Tang, “Robustness and modular design of the drosophila segment polarity network,” Molecular Systems Biology 2, 70 (2006).
182.84 kb
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67. Danying Shao, Wen Zheng, Wenjun Qiu, Qi Ouyang, and Chao Tang, “Dynamic studies of scaffold-dependent mating pathway in yeast,” Biophysical journal 91, 3986–4001 (2006).
470.89 kb
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66. Yuping Zhang, Minping Qian, Qi Ouyang, Minghua Deng, Fangting Li, and Chao Tang, “Stochastic model of yeast cell-cycle network,” Physica D: Nonlinear Phenomena 219, 35–39 (2006).
445.7 kb
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65. Fangting Li, Ying Lu, Tao Long, Qi Ouyang, and Chao Tang, “Global dynamic properties of protein networks,” in Frontiers And Prospects Of Contemporary Applied Mathematics (World Scientific, 2005) pp. 149–159.
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64. Erik Kruus, Peter Thumfort, Chao Tang, and Ned S Wingreen, “Gibbs sampling and helix-cap motifs,” Nucleic acids research 33, 5343–5353 (2005).
324.56 kb
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63. Wenzhe Ma, Chao Tang, and Luhua Lai, “Specificity of trypsin and chymotrypsin: loop-motion-controlled dynamic correlation as a determinant,” Biophysical journal 89, 1183–1193 (2005).
558.83 kb
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62. Morten Kloster, Chao Tang, and Ned S Wingreen, “Finding regulatory modules through large-scale gene-expression data analysis,” Bioinformatics 21, 1172–1179 (2004).
217.05 kb
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61. Susanne Moelbert, Eldon Emberly, and Chao Tang, “Correlation between sequence hydrophobicity and surface-exposure pattern of database proteins,” Protein Science 13, 752–762 (2004).
297.62 kb
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60. Fangting Li, Tao Long, Ying Lu, Qi Ouyang, and Chao Tang, “The yeast cell-cycle network is robustly designed,” Proceedings of the National Academy of Sciences 101, 4781–4786 (2004).
608.4 kb
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59. Eldon G Emberly, Ranjan Mukhopadhyay, Chao Tang, and Ned S Wingreen, “Flexibility of β-sheets: Principal component analysis of database protein structures,” Proteins: Structure, Function, and Bioinformatics 55, 91–98 (2004).
479.28 kb
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58. Morten Kloster and Chao Tang, “Simulation and analysis of in vitro dna evolution,” Physical review letters 92, 038101 (2004).
147.85 kb
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57. Ned S Wingreen, Hao Li, and Chao Tang, “Designability and thermal stability of protein structures,” Polymer 45, 699–705 (2004).
1636.3 kb
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56. Ranjan Mukhopadhyay, Eldon Emberly, Chao Tang, and Ned S Wingreen, “Statistical mechanics of rna folding: Importance of alphabet size,” Physical Review E 68, 041904 (2003).
63.37 kb
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55. Jinfeng Zhang, Rong Chen, Chao Tang, and Jie Liang, “Origin of scaling behavior of protein packing density: A sequential monte carlo study of compact long chain polymers,” The Journal of chemical physics 118, 6102–6109 (2003).
404.66 kb
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54. Eldon G Emberly, Ranjan Mukhopadhyay, Ned S Wingreen, and Chao Tang, “Flexibility of α-helices: Results of a statistical analysis of database protein structures,” Journal of molecular biology 327, 229–237 (2003).
731.95 kb
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53. Mehdi Yahyanejad, Mehran Kardar, and Chao Tang, “Structure space of model proteins: a principal component analysis,” The Journal of chemical physics 118, 4277–4284 (2003).
347.74 kb
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52. Hao Li, Chao Tang, and Ned S Wingreen, “Designability of protein structures: A lattice-model study using the miyazawa-jernigan matrix,” Proteins: Structure, Function, and Bioinformatics 49, 403–412 (2002).
415 kb
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51. Eldon G Emberly, Ned S Wingreen, and Chao Tang, “Designability of α-helical proteins,” Proceedings of the National Academy of Sciences 99, 11163–11168 (2002).
404.39 kb
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50. Jonathan Miller, Chen Zeng, Ned S Wingreen, and Chao Tang, “Emergence of highly designable protein-backbone conformations in an off-lattice model,” Proteins: Structure, Function, and Bioinformatics 47, 506–512 (2002).
300.31 kb
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49. Eldon G Emberly, Jonathan Miller, Chen Zeng, Ned S Wingreen, and Chao Tang, “Identifying proteins of high designability via surface-exposure patterns,” Proteins: Structure, Function, and Bioinformatics 47, 295–304 (2002).
294.01 kb
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48. Henry Cejtin, Jan Edler, Allan Gottlieb, Robert Helling, Hao Li, James Philbin, Ned Wingreen, and Chao Tang, “Fast tree search for enumeration of a lattice model of protein folding,” The Journal of chemical physics 116, 352–359 (2002).
442.74 kb
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47. H. Li, C. Tang, and N. Wingreen, “Designing Protein Structures,” in Phase Transitions and Self-Organization in Electronic and Molecular Networks, pp 441-445, edited by J.C. Philips and M.F. Thorpe (Kluwer Academic/Plenum Publishers, 2001).
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46. Robert Helling, Hao Li, Régis Mélin, Jonathan Miller, Ned Wingreen, Chen Zeng, and Chao Tang, “The designability of protein structures,” Journal of Molecular Graphics and Modelling 19, 157–167 (2001).
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45. Morten Kloster, Sergei Maslov, and Chao Tang, “Exact solution of a stochastic directed sandpile model,” Physical Review E 63, 026111 (2001).
59.47 kb
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44. Tairan Wang, Jonathan Miller, Ned S Wingreen, Chao Tang, and Ken A Dill, “Symmetry and designability for lattice protein models,” The Journal of Chemical Physics 113, 8329–8336 (2000).
414.72 kb
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43. Chao Tang, “Simple models of the protein folding problem,” Physica A: Statistical Mechanics and its Applications 288, 31–48 (2000).
571.24 kb
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42. Sergei Maslov, Chao Tang, and Yi-Cheng Zhang, “1/f noise in bak-tang-wiesenfeld models on narrow stripes,” Physical Review Letters 83, 2449 (1999).
75.79 kb
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41. Colin Denniston and Chao Tang, “Incommensurability in the frustrated two-dimensional xy model,” Physical Review B 60, 3163 (1999).
100.68 kb
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40. Régis Mélin, Hao Li, Ned S Wingreen, and Chao Tang, “Designability, thermodynamic stability, and dynamics in protein folding: a lattice model study,” The Journal of chemical physics 110, 1252–1262 (1999).
213.46 kb
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39. Chao Tang, “Fractal dimension of julia set for nonanalytic maps,” Journal of statistical physics 93, 1001–1008 (1998).
163.72 kb
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38. Colin Denniston and Chao Tang, “Low-energy excitations and phase transitions in the frustrated two-dimensional xy model,” Physical Review B 58, 6591 (1998).
382.77 kb
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37. Hao Li, Chao Tang, and Ned S Wingreen, “Are protein folds atypical?” Proceedings of the National Academy of Sciences 95, 4987–4990 (1998).
181.23 kb
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36. Colin Denniston and Chao Tang, “Domain walls and phase transitions in the frustrated two-dimensional xy model,” Physical review letters 79, 451 (1997).
189.65 kb
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35. Hao Li, Chao Tang, and Ned S Wingreen, “Nature of driving force for protein folding: a result from analyzing the statistical potential,” Physical review letters 79, 765 (1997).
111.97 kb
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