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164. Shuzhang Liu, Jing Ling, Beichen Xie, Yuan Zhang, Luxin Peng, Luming Yang, Yi Yu, Junye Lin, Chao Tang, Zhixing Chen, Peng Zou."Positive-going hybrid indicators for voltage imaging in excitable cells and tissues"Science Advances(2025)
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163. Yixuan Chen, Guoye Guan, Lei-Han Tang, Chao Tang."Balancing reaction-diffusion network for cell polarization pattern with stability and asymmetry"eLife(2025)
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162. Guoye Guan, Zelin Li, Yiming Ma, Pohao Ye, Jianfeng Cao, Ming-Kin Wong, Vincy Wing Sze Ho, Lu-Yan Chan, Hong Yan, Chao Tang, Zhongying Zhao."Cell lineage-resolved embryonic morphological map reveals signaling associated with cell fate and size asymmetry" Nature Communications(2025)
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161. Cunmin Zhao, Zelin Li, Pei Zhang, Yixuan Chen, Pohao Ye, Ming-Kin Wong, Lu-Yan Chan, Hong Yan, Chao Tang, Guoye Guan, Zhongying Zhao."EmbSAM: Cell boundary localization and Segment Anything Model for fast images of developing embryos".bioRxiv（2024）
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160. Jianfeng Cao, Lihan Hu, Guoye Guan, Zelin Li, Zhongying Zhao, Chao Tang, Hong Yan."CShaperApp: Segmenting and analyzing cellular morphologies of the developing Caenorhabditis elegans embryo".Quantitative Biology(2024)
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159. Huixia Ren, Yanjun Li, Beichen Xie, Weiran Qian, Yi Yu, Tianyi Chang, Xiaojing Yang, Kim Sneppen, Liangyi Chen, Chao Tang."δ-α cell-to-cell interactions modulate pancreatic islet Ca2+ oscillation modes".bioRxiv(2024)
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158. Jia Zhao, Shenghui Liang, Haoning Howard Cen, Yanjun Li, Robert K Baker, Balwinder Ruprai, Guang Gao, Chloe Zhang, Huixia Ren, Chao Tang, Liangyi Chen, Yanmei Liu, Francis C Lynn, James D Johnson, Timothy J Kieffer."PDX1+ cell budding morphogenesis in a stem cell-derived islet spheroid system".Nature Communications(2024)
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157. Guoye Guan, Yixuan Chen, Hongli Wang, Qi Ouyang, Chao Tang."Characterizing cellular physiological states with three-dimensional shape descriptors for cell membranes".Membranes (2024)
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156. Qi Liu, Nan Sheng, Zhiwen Zhang, Chenjun He, Yao Zhao, Haoyuan Sun, Jianguo Chen, Xiaojing Yang, and Chao Tang. "Initial nutrient condition determines the recovery speed of quiescent cells in fission yeast." Heliyon (2024).
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155. Guoye Guan, Ce Luo, Lei-Han Tang, Chao Tang."Modulating cell proliferation by asymmetric division: A conserved pattern in the early embryogenesis of nematode species".Micropublication Biology (2024)
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154. Yixuan Chen, Guoye Guan, Lei-Han Tang, and Chao Tang. "Balancing reaction-diffusion network for cell polarization pattern with stability and asymmetry." arXiv preprint arXiv:2401.07227 (2024).
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153. Xiaohong Peng, Huixia Ren, Lu Yang, Shiyan Tong, Renjie Zhou, Haochen Long, Yunxiang Wu et al. "Readily releasable β cells with tight Ca2+–exocytosis coupling dictate biphasic glucose-stimulated insulin secretion." Nature Metabolism (2024): 1-16.
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152. Ning Yang, Chao Tang, and Yuhai Tu, “Stochastic Gradient Descent Introduces an Effective Landscape-Dependent Regularization Favoring Flat Solutions”, Physical Review Letters 130, 237101(2023).
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151. Guoye Guan, Xiangyu Kuang, Chao Tang, and Lei Zhang. "Comparison between phase-field model and coarse-grained model for characterizing cell-resolved morphological and mechanical properties in a multicellular system." Communications in Nonlinear Science and Numerical Simulation 117 (2023): 106966.
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150. Xiangyu Kuang, Guoye Guan, Chao Tang, and Lei Zhang. "MorphoSim: An efficient and scalable phase-field framework for accurately simulating multicellular morphologies." NPJ Systems Biology and Applications 9, no. 1 (2023): 6.
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149. Jingxiang Shen, Feng Liu, and Chao Tang. "Scaling dictates the decoder structure." Science Bulletin 67, no. 14 (2022): 1486-1495.
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148. Huixia Ren, Yanjun Li, Chengsheng Han, Yi Yu, Bowen Shi, Xiaohong Peng, Tianming Zhang, Xiaojing Yang, Sneppen Kim, Liangyi Chen, Chao Tang . "Pancreatic α and β cells are globally phase-locked." Nature Communications 13, no. 1 (2022): 1-16.
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147. Guoye Guan, Zhongying Zhao, and Chao Tang. "Delineating mechanisms and design principles of Caenorhabditis elegans embryogenesis using in toto high-resolution imaging data and computational modeling."Computational and Structural Biotechnology Journal(2022)
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146. Ye Lei, Zhiyun Zhao, Huixia Ren, Wencui Wang, Wenzhong Zhou, Sichang Zheng, Rulai Han, Jie zhang, Haorong Li, Zhihan Wan, Chao Tang, Shouyue Sun, Weiqing Wang, Guang Ning. "A Multiclassifier System to Identify and Subtype Congenital Adrenal Hyperplasia Based on Circulating Steroid Hormones"The Journal of Clinical Endocrinology & Metabolism(2022)
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145.Zhao, Yang, Zhenghao Yang, Xiaochan Xu, Chao Tang, and Fan Guo. "Chemical pretreatment activated a plastic state amenable to direct lineage reprogramming." Frontiers in Cell and Developmental Biology(2022)
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144. Du Yuanyuan, Zhen Liang, Shusen Wang, Dong Sun, Xiaofeng Wang, Soon Yi Liew, Shuaiyao Lu et al. "Human pluripotent stem-cell-derived islets ameliorate diabetes in non-human primates." Nature Medicine 28, no. 2(2022) :2-282.
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143. Yang Zhenghao, Xiaochan Xu, Chan Gu, Alexander Valentin Nielsen, Guokai Chen, Fan Guo, Chao Tang, and Yang Zhao. "Chemical Pretreatment Activated a Plastic State Amenable to Direct Lineage Reprogramming." Frontiers in cell and developmental biology(2022)
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142. Yuan Yuan, Huixia Ren, Yanjun Li, Shanshan Qin, Xiaojing Yang, and Chao Tang. "Cell-to-cell variability in inducible Caspase9-mediated cell death." Cell death & disease 13, no. 1 (2022): 1-11.
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141. Sun Zhi, Weijia Wei, Mingyue Zhang, Wenjia Shi, Yeqing Zong, Yihua Chen, Xiaojing Yang, Bo Yu, Chao Tang, and Chunbo Lou. "Synthetic robust perfect adaptation achieved by negative feedback coupling with linear weak positive feedback." Nucleic Acids Research(2022)
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140. Kuang Xiangyu, Guoye Guan, Ming-Kin Wong, Lu-Yan Chan, Zhongying Zhao, Chao Tang, and Lei Zhang. "Computable early Caenorhabditis elegans embryo with a phase field model." PLOS Computational Biology 18, no. 1 (2022): e1009755.
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139. Zhang Junwei, Xiaohong Peng, Yunxiang Wu, Huixia Ren, Jingfu Sun, Shiyan Tong, Tianyan Liu et al. "Red‐and Far‐Red‐Emitting Zinc Probes with Minimal Phototoxicity for Multiplexed Recording of Orchestrated Insulin Secretion." Angewandte Chemie(2021)
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138. Guan Guoye, Ming-Kin Wong, Zhongying Zhao, Lei-Han Tang, and Chao Tang. "Volume segregation programming in a nematode's early embryogenesis." Physical Review E 104, no. 5 (2021): 054409.
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137. Guan Guoye, Wong Ming-Kin, Chan Lu-Yan, Sze Ho Vincy Wing, An Xiaomeng, Zhao Zhongying, and Chao Tang. "Investigating spatio-temporal cellular interactions in embryonic morphogenesis by 4D nucleus tracking and systematic comparative analysis—Taking Nematodes C. elegans and C. briggsae as Examples"2021 IEEE the 9th International Conference on Bioinformatics and Computational Biology
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136. Liu Yuxuan, Qianyi Li, Chao Tang, Shanshan Qin, and Yuhai Tu. "Short-Term Plasticity Regulates Both Divisive Normalization and Adaptive Responses in Drosophila Olfactory System." Frontiers in computational neuroscience (2021): 92.
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135. Jiao Miao, Guoye Guan, Chao Tang, "Spontaneous cell internalization of a spatially-confined proliferating blastomere: A mechanical interpretation on worm gastrulation", arXiv:2105.05795 (2021)
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134. Xu Xiaochan, Wei Yang, Binghui Tian, Xiuwen Sui, Weilai Chi, Yi Rao, and Chao Tang. "Quantitative investigation reveals distinct phases in Drosophila sleep." Communications biology 4, no. 1 (2021): 1-11.
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133. Cao Jianfeng, Guoye Guan, Vincy Wing Sze Ho, Ming-Kin Wong, Lu-Yan Chan, Chao Tang, Zhongying Zhao, and Hong Yan. "Establishment of a morphological atlas of the Caenorhabditis elegans embryo using deep-learning-based 4D segmentation." Nature communications(2020)
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132. Guoye Guan, Lei-Han Tang and Chao Tang, "Reconstructing the multicellular structure of a developing metazoan embryo with repulsion-attraction model and cell-cell connection atlas in vivo", Journal of Physics: Conference Series,(2020): 012020
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131. Yimiao Qu, Jun Jiang, Xiang Liu, Xiaojing Yang, Chao Tang, "Non-epigenetic mechanisms enable short memories of the environment for cell cycle commitment", bioRxiv, 250704 (2020).
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130. Jun Jiang, Yimiao Qu, Xiang Liu, Chao Tang, Ping Wei, "Antagonistic crosstalk fine-tunes sensitivities of IRE1 and PERK signaling during unfolded protein response", bioRxiv, 243527 (2020).
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129. Kurt M. Schmoller, Michael C. Lanz, Jacob Kim, Mardo Koivomagi, Yimiao Qu, Chao Tang, Igor V. Kukhtevich, Robert Schneider, Fabian Rudolf, David F. Moreno, Martí Aldea, Rafael Lucena, Doug Kellogg, Jan M. Skotheim, "Whi5 is diluted and protein synthesis does not dramatically increase in pre-Start G1".bioRxiv(2020)
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128. Yimiao Qu, Jun Jiang, Xiaojing Yang, and Chao Tang, "Protocol for Titrating Gene Expression Levels in Budding Yeast", STAR Protocols, (2020): 2020.100082 .
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127. Guoye Guan, Meichen Fang, Ming-Kin Wong, et al, "Multilevel regulation of muscle-specific transcription factor hlh-1 during Caenorhabditis elegans embryogenesis", Development Genes and Evolution, (2020): 10.1007.
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126. Dapeng Ju, Wei Zhang, et al. "Chemical perturbations reveal that RUVBL2 regulates the circadian phase in mammals", Science Translational Medicine 12, (2020): eaba0769.
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125. Huixia Ren, Mengdi Zhao, Bo Liu, Ruixiao Yao, Qi Liu, Zhipeng Ren, Zirui Wu, Zongmao Gao, Xiaojing Yang, Chao Tang, "Cellbow: a robust customizable cell segmentation program", Quantitative Biology 8(3), (2020): 245–255.
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124. Yao Zhao, Dedi Wang, Zhiwen Zhang, Ying Lu, Xiaojing Yang, Qi Ouyang, Chao Tang, and Fangting Li, "Critical slowing down and attractive manifold: A mechanism for dynamic robustness in the yeast cell-cycle process.", Physical Review E 101, (2020): 042
3757.71 kb
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123. Li, Junjun, Lu Zhang, Leqian Yu, Itsunari Minami, Shigeru Miyagawa, Marcel Hörning, Ji Dong et al. "Circulating re-entrant waves promote maturation of hiPSC-derived cardiomyocytes in self-organized tissue ring." Communications biology(2020)
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122. Binghui Tian, Guoye Guan, Lei-Han Tang and Chao Tang, "Why and how the nematode’s early embryogenesis can be precise and robust: a mechanical perspective", Physical biology 17, (2020): 026001.
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121. Lu Zhang, Junjun Li, Li Liu, Chao Tang, "Analysis of circulating Waves in tissue Rings derived from Human induced pluripotent Stem cells", Scientific Reports, (2020): 10:2984.
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120. Chang Chang, Simone Bianco, Ashley Acevedo, Chao Tang, Raul Andino, "Genetic interactions shaping evolutionary trajectories in an RNA virus population", bioRxiv, 908129 (2020).
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119. Jingxiang Shen, Feng Liu, Yuhai Tu, Chao Tang, “Finding gene network topologies for given biological function with recurrent neural network”, Nature communication, (2021): 12:3125.
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118. Yimiao Qu, Jun Jiang, Xiang Liu, Ping Wei, Xiaojing Yang, and Chao Tang “Cell Cycle Inhibitor Whi5 Records Environmental Information to Coordinate Growth and Division in Yeast”，Cell Reports 29, (2019): 987–994.
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117. Guoye Guan, Ming-Kin Wong, Vincy Wing Sze Ho, Xiaomeng An, Lu-Yan Chan, Binghui Tian, Zhiyuan Li, Leihan Tang, Zhongying Zhao, Chao Tang,“System-Level Quantification and Phenotyping of Early Embryonic Morphogenesis of Caenorhabditis elegans”,bioRxiv,
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116. Shanshan Qin, Qianyi Li, Chao Tang, and Yuhai Tu, “Optimal compressed sensing strategies for an array of nonlinear olfactory receptor neurons with and without spontaneous activity,” PNAS, (2019): 1906571116.
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115. Lingxia Qiao, Wei Zhao, Chao Tang, Qing Nie, Lei Zhang, "Network Topologies That Can Achieve Dual Function of Adaptation and Noise Attenuation", Cell Systems 9, 271–285 (2019).
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114. Mingyue Zhang and Chao Tang, “Bi-functional biochemical networks,” Physical biology 16, 016001 (2019).
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113. Xin Wang, Kang Xia, Xiaojing Yang, and Chao Tang, “Growth strategy of microbes on mixed carbon sources,” Nature communications 10, 1279 (2019).
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112. Ting Zhao, Yao Fu, et al. "Single-cell RNA-Seq reveals dynamic early embryonic-like programs during chemical reprogramming", Cell Stem Cell, 2018, 23(1): 31-45. (2018).
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111. Zongmao Gao, Haoyuan Sun, Shanshan Qin, Xiaojing Yang, and Chao Tang, “A systematic study of the determinants of protein abundance memory in cell lineage,” Science Bulletin 63, 1051–1058 (2018).
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110. Leqian Yu, Junjun Li, Jiayin Hong, Yasuhiro Takashima, Nanae Fujimoto, Minako Nakajima, Akihisa Yamamoto, Xiaofeng Dong, Yujiao Dang, Yu Hou, et al., “Low cell-matrix adhesion reveals two subtypes of human pluripotent stem cells”.Stem cell reports(2018)
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109. Shanshan Qin and Chao Tang, “Early-warning signals of critical transition: Effect of extrinsic noise,” Physical Review E 97, 032406 (2018).
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108. Zongmao Gao, Siheng Chen, Shanshan Qin, and Chao Tang, “Network motifs capable of decoding transcription factor dynamics,” Scientific reports 8, 3594 (2018).
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107. Peijia Yu, Qing Nie, Chao Tang, and Lei Zhang, “Nanog induced intermediate state in regulating stem cell differentiation and reprogramming,” BMC systems biology 12, 22 (2018).
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106. Li-Hui Cao, Dong Yang, Wei Wu, Xiankun Zeng, Bi-Yang Jing, Meng-Tong Li, Shanshan Qin, Chao Tang, Yuhai Tu, and Dong-Gen Luo,“Odor-evoked inhibition of olfactory sensory neurons drives olfactory perception in drosophila”.Nature communications(2017)
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105. Zhi-Bo Zhang, Qiu-Yue Wang, Yu-Xi Ke, Shi-Yu Liu, Jian-Qi Ju, Wendell A Lim, Chao Tang, and Ping Wei, “Design of tunable oscillatory dynamics in a synthetic nf-κb signaling circuit,” Cell systems 5, 460–470 (2017).
4852.51 kb
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164. Shuzhang Liu, Jing Ling, Beichen Xie, Yuan Zhang, Luxin Peng, Luming Yang, Yi Yu, Junye Lin,... download.pd
163. Yixuan Chen, Guoye Guan, Lei-Han Tang, Chao Tang."Balancing reaction-diffusion network for c... download.pd
162. Guoye Guan, Zelin Li, Yiming Ma, Pohao Ye, Jianfeng Cao, Ming-Kin Wong, Vincy Wing Sze Ho, L... download.pd
161. Cunmin Zhao, Zelin Li, Pei Zhang, Yixuan Chen, Pohao Ye, Ming-Kin Wong, Lu-Yan Chan, Hong Ya... download.pd
160. Jianfeng Cao, Lihan Hu, Guoye Guan, Zelin Li, Zhongying Zhao, Chao Tang, Hong Yan."CShaperAp... download.pd
