Second AMP paper online

Jiaxuan's AMP screening work has been published in Adv. Sci. (Link). This study introduces a mechanism-driven screening approach that leverages machine learning-based computational models to identify antimicrobial peptide sequences capable of targeting bacterial membranes and forming pores. Screening metaproteomes from poison frogs, African clawed frogs, and human skin led to the identification and validation of seven novel peptides. Each exhibited potent antimicrobial activity while demonstrating minimal hemolysis and cytotoxicity. Liposome leakage assays confirmed membrane disruption, with three peptides showing broad-spectrum efficacy against both Gram-positive and Gram-negative bacteria. Single-molecule experiments visualized peptide oligomerization on membranes, and electrophysiological measurements directly verified pore formation by the three broad-spectrum AMPs, suggesting a strong correlation between pore-forming capability and broad-spectrum activity. This research establishes a promising, mechanism-driven strategy for discovering new antimicrobial agents to combat antibiotic resistance. We extend our congratulations to Jiaxuan and all collaborators on this significant publication. Congratulations!

iHuman Forum 2025

Prof. Chen SONG was invited to deliver a presentation at the 10th iHuman Forum, convened at ShanghaiTech University from October 31 to November 1, 2025. His talk, entitled "Decoding the Molecular Mechanisms of Valence Selectivity in Ca²⁺ Channels: A Computational Study," addressed key computational insights into ion channel selectivity.

(This photo was taken by Prof. Yuji Sugita)

AMPainter online

Ruihan's AMPainter work has been published in Adv. Sci. (Link). AMPainter is a powerful design model for 'painting' the antimicrobial potency on any given peptide sequence, based on the strategy of virtual directed evolution and deep reinforcement learning. The wet lab validations of the designed AMPs were conducted in our lab with Qiushi's participation. Meanwhile, our patents on the model and peptides have been granted recently. Congratulations!


Qianli and Jiajun joined our group

We are delighted to welcome Qianli and Jiajun to our group, following the successful completion of their rotations. Qianli will focus on MD simulations of the Sec system, and Jiajun will work on predicting protein multiple conformations. Their diverse expertise will be a valuable asset to our group. Welcome!

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