2015年发表论文
V1 neurons respond to luminance changes faster than contrast changes.
Wen-Liang Wang,Ran Li,Jian Ding,Louis Tao,Da-Peng Li,Yi Wanga.
Scientific Reports 4, 17173 (2016). [PubMed]
Estimation of isoform expression in RNA-seq data using a hierarchical Bayesian model.
Zengmiao Wang,Jun Wang,Changjing Wu,Minghua Deng.
J Bioinform Comput Biol. 2015;13(6):1542001. [PubMed]
Novel mutations and polymorphisms in the CFTR gene associated with three subtypes of congenital absence of vas deferens.
Xiaojian Yang,Qipeng Sun,Ping Yuan,Hao Liang,Xiao Wu,Luhua Lai,Yan Zhang.
Fertil Steril. 2015;104(5):1262-1268. [PubMed]
Deep Learning for Drug-Induced Liver Injury.
Youjun Xu,Ziwei Dai,Fangjin Chen,Shuaishi Gao,Jianfeng Pei,Luhua Lai.
J Chem Inf Model. 2015;55(10):2085-2093. [PubMed]
Cryo-EM structure of the activated NAIP2-NLRC4 inflammasome reveals nucleated polymerization.
Liman Zhang,Shuobing Chen,Jianbin Ruan,Jiayi Wu,Alexander B. Tong,Qian Yin,Yang Li,Liron David,Alvin Lu,Wei Li Wang,Carolyn Marks,Qi Ouyang,Xinzheng Zhang,Youdong Mao,Hao Wu.
Science. 2015;350(6259):404-409. [PubMed]
CCLasso: correlation inference for compositional data through Lasso.
Huaying Fang,Chengcheng Huang,Hongyu Zhao,Minghua Deng.
Bioinformatics. 2015;31(19):3172-3180. [PubMed]
Bacterial chemoreceptors and chemoeffectors.
Bi, S. Y.; Lai, L. H.
Cell. Mol. Life Sci. 2015, 72, (4), 691-708. [PubMed]
The free-energy cost of accurate biochemical oscillations.
Cao, Y. S.; Wang, H. L.; Ouyang, Q.; Tu, Y. H.
Nature Physics 2015, 11, (9), 772-+. [PubMed]
Molecular dynamic analysis of mutant Y195I alpha-cyclodextrin glycosyltransferase with switched product specificity from alpha-cyclodextrin to gamma-cyclodextrin.
Chen, F. J.; Xie, T.; Yue, Y.; Qian, S. J.; Chao, Y. P.; Pei, J. F.
Journal of Molecular Modeling 2015, 21, (8). [PubMed]
A Gene Expression Profiling of Early Rice Stamen Development that Reveals Inhibition of Photosynthetic Genes by OsMADS58.
Chen, R.; Shen, L. P.; Wang, D. H.; Wang, F. G.; Zeng, H. Y.; Chen, Z. S.; Peng, Y. B.; Lin, Y. N.; Tang, X.; Deng, M. H.; Yao, N.; Luo, J. C.; Xu, Z. H.; Bai, S. N.
Molecular Plant 2015, 8, (7), 1069-1089. [PubMed]
Distinguishing the rates of gene activation from phenotypic variations.
Chen, Y.; Lv, C.; Li, F. T.; Li, T. J.
BMC Syst. Biol. 2015, 9. [PubMed]
Horizontal gene transfer in an acid mine drainage microbial community.
Guo, J. T.; Wang, Q.; Wang, X. Q.; Wang, F. M.; Yao, J. X.; Zhu, H. Q.
BMC Genomics 2015, 16. [PubMed]
Application of physics in the study of cell polarity during tumor cell migration.
Jing, W.; Gen, Y.; Feng, L.
Acta Physica Sinica 2015, 64, (5). [PubMed]
Flexibility and Symmetry of Prokaryotic Genome Rearrangement Reveal Lineage-Associated Core-Gene-Defined Genome Organizational Frameworks.
Kang, Y.; Gu, C. H.; Yuan, L. N.; Wang, Y.; Zhu, Y. M.; Li, X. N.; Luo, Q. B.; Xiao, J. F.; Jiang, D. Q.; Qian, M. P.; Khan, A. A.; Chen, F.; Zhang, Z.; Yu, J.
Mbio 2015, 6, (1); vol 5, e01867, 2014. [PubMed]
InteMAP: Integrated metagenomic assembly pipeline for NGS short reads.
Lai, B. B.; Wang, F. M.; Wang, X. Q.; Duan, L. P.; Zhu, H. Q.
BMC Bioinformatics 2015, 16. [PubMed]
Reliable cell cycle commitment in budding yeast is ensured by signal integration.
Liu, X. L.; Wang, X.; Yang, X. J.; Liu, S.; Jiang, L. L.; Qu, Y. M.; Hu, L. F.; Ouyang, Q.; Tang, C.
Elife 2015, 4. [PubMed]
Energy Landscape Reveals That the Budding Yeast Cell Cycle Is a Robust and Adaptive Multi-stage Process.
Lv, C.; Li, X. G.; Li, F. T.; Li, T. J.
PLoS Comput. Biol. 2015, 11, (3). [PubMed]
Trip6 Promotes Dendritic Morphogenesis through Dephosphorylated GRIP1-Dependent Myosin VI and F-Actin Organization.
Lv, K. S.; Chen, L.; Li, Y. J.; Li, Z. L.; Zheng, P. L.; Liu, Y. Y.; Chen, J. G.; Teng, J. L.
J. Neurosci. 2015, 35, (6), 2559-2571. [PubMed]
Allosteric sites can be identified based on the residue-residue interaction energy difference.
Ma, X. M.; Qi, Y. F.; Lai, L. H.
Proteins-Structure Function and Bioinformatics 2015, 83, (8), 1375-1384. [PubMed]
Differential genetic interactions of yeast stress response MAPK pathways.
Martin, H.; Shales, M.; Fernandez-Pinar, P.; Wei, P.; Molina, M.; Fiedler, D.; Shokat, K. M.; Beltrao, P.; Lim, W.; Krogan, N. J.
Mol. Syst. Biol. 2015, 11, (4). [PubMed]
Diverse Ways of Perturbing the Human Arachidonic Acid Metabolic Network To Control Inflammation.
Meng, H.; Liu, Y.; Lai, L. H.
Accounts of Chemical Research 2015, 48, (8), 2242-2250. [PubMed]
An Atlas of Network Topologies Reveals Design Principles for Caenorhabditis elegans Vulval Precursor Cell Fate Patterning.
Ping, X. F.; Tang, C.
PLoS One 2015, 10, (6). [PubMed]
Pump-free gradient-based micro-device enables quantitative and high-throughput bacterial growth inhibition analysis.
Ran, M.; Wang, Y.; Wang, S. D.; Luo, C. X.
Biomedical Microdevices 2015, 17, (4). [PubMed]
From Boolean Network Model to Continuous Model Helps in Design of Functional Circuits.
Shao, B.; Liu, X.; Zhang, D. L.; Wu, J. Y.; Ouyang, Q.
PLoS One 2015, 10, (6). [PubMed]
Minimum network constraint on reverse engineering to develop biological regulatory networks.
Shao, B.; Wu, J. Y.; Tian, B. H.; Ouyang, Q.
J. Theor. Biol. 2015, 380, 9-15. [PubMed]
Arabidopsis DET1 degrades HFR1 but stabilizes PIF1 to precisely regulate seed germination.
Shi, H.; Wang, X.; Mo, X. R.; Tang, C.; Zhong, S. W.; Deng, X. W.
Proc. Natl. Acad. Sci. U. S. A. 2015, 112, (12), 3817-3822. [PubMed]
A mechanism for graded, dynamically routable current propagation in pulse-gated synfire chains and implications for information coding.
Sornborger, A. T.; Wang, Z.; Tao, L.
J. Comput. Neurosci. 2015, 39, (2), 181-195. [PubMed]
Extracellular calumenin suppresses ERK1/2 signaling and cell migration by protecting fibulin-1 from MMP-13-mediated proteolysis.
Wang, Q.; Shen, B.; Chen, L.; Zheng, P.; Feng, H.; Hao, Q.; Liu, X.; Liu, L.; Xu, S.; Chen, J.; Teng, J.
Oncogene 2015, 34, (8), 1006-1018. [PubMed]
Functional genomic analysis of Hawaii marine metagenomes.
Wang, X. Q.; Wang, Q.; Guo, X.; Liu, L. Y.; Guo, J. T.; Yao, J. T.; Zhu, H. Q.
Science Bulletin 2015, 60, (3), 348-355. [PubMed]
Studies of Antibiotic Resistance of Beta-Lactamase Bacteria under Different Nutrition Limitations at the Single-Cell Level.
Wang, Y.; Ran, M.; Wang, J.; Ouyang, Q.; Luo, C. X.
PLoS One 2015, 10, (5). [PubMed]
Low-Rank and Sparse Matrix Decomposition for Genetic Interaction Data.
Wang, Y. S.; Yang, D. J.; Deng, M. H.
Biomed Research International 2015. [PubMed]
Modeling the mitotic regulatory network identifies highly efficient anti-cancer drug combinations.
Wu, Y. R.; Zhuo, X. L.; Dai, Z. W.; Guo, X.; Wang, Y.; Zhang, C. M.; Lai, L. H.
Molecular Biosystems 2015, 11, (2), 497-505. [PubMed]
Early Telomerase Inactivation Accelerates Aging Independently of Telomere Length.
Xie, Z. W.; Jay, K. A.; Smith, D. L.; Zhang, Y.; Liu, Z. R.; Zheng, J. S.; Tian, R. L.; Li, H.; Blackburn, E. H.
Cell 2015, 160, (5). [PubMed]
Design, Construction, and Characterization of a Set of Biosensors for Aromatic Compounds.
Xue, H. R.; Shi, H. L.; Yu, Z.; He, S. X.; Liu, S. Y.; Hou, Y. H.; Pan, X. J.; Wang, H.; Zheng, P.; Cui, C.; Viets, H.; Liang, J.; Zhang, Y. H.; Chen, S. B.; Zhang, H. Q. M.; Ouyang, Q.
Acs Synthetic Biology 2014, 3, (12), 1011-1014. [PubMed]
Systematic analysis of asymmetric partitioning of yeast proteome between mother and daughter cells reveals "aging factors" and mechanism of lifespan asymmetry.
Yang, J.; McCormick, M. A.; Zheng, J. S.; Xie, Z. W.; Tsuchiya, M.; Tsuchiyama, S.; El-Samad, H.; Qi, O. Y.; Kaeberlein, M.; Kennedy, B. K.; Li, H.
Proc. Natl. Acad. Sci. U. S. A. 2015, 112, (38), 11977-11982. [PubMed]
A novel microfluidic platform for studying mammalian cell chemotaxis in different oxygen environments under zero-flow conditions.
Yang, W.; Luo, C. X.; Lai, L. H.; Ouyang, Q.
Biomicrofluidics 2015, 9, (4). [PubMed]
CD4 T-cell transcriptome analysis reveals aberrant regulation of STAT3 and Wnt signaling pathways in rheumatoid arthritis: evidence from a case-control study.
Ye, H.; Zhang, J.; Wang, J.; Gao, Y. Y.; Du, Y.; Li, C.; Deng, M. H.; Guo, J. P.; Li, Z. G.
Arthritis Res. Ther. 2015, 17. [PubMed]
Both piston-like and rotational motions are present in bacterial chemoreceptor signaling.
Yu, D. Q.; Ma, X. M.; Tu, Y. H.; Lai, L. H.
Sci. Rep. 2015, 5. [PubMed]
Binding cavities and druggability of intrinsically disordered proteins.
Zhang, Y. G.; Cao, H. Q.; Liu, Z. R.
Protein Sci. 2015, 24, (5), 688-705. [PubMed]
Mutation-induced protein interaction kinetics changes affect apoptotic network dynamic properties and facilitate oncogenesis.
Zhao, L. J.; Sun, T. L.; Pei, J. F.; Ouyang, Q.
Proc. Natl. Acad. Sci. U. S. A. 2015, 112, (30), E4046-E4054. [PubMed]
A systematic analysis of asymmetric partitioning of yeast proteome between mother and daughter cells reveals novel “aging factors” and mechanism of lifespan asymmetry.
Jing Yang,Mark A. McCormick,Jiashun Zheng,Zhengwei Xie,Mitsuhiro Tsuchiya,Scott Tsuchiyama,Hana El-Samad,Qi Ouyang,Matt Kaeberlein,Brian K. Kennedy,Hao Li.
PNAS, (2015) 11977-82. [PubMed]
Cryo-EM Structures of the Activated PrgJ/NAIP2/NLRC4 Inflammasome Complexes.
LM Zhang, SB Chen, JB Ruan, JY Wu, QYin, L David, A Lu, WL Wang, C Marks, Qi Ouyang, XZ Zhang, YD Mao*, and H Wu.
Science, 350, (2015), 404-409. [PubMed]
Designing a stochastic genetic switch by coupling chaos and bistability.
Xiang Zhao,Qi Ouyang,Hongli Wang.
Chaos, 25, 113112 (2015). [PubMed]
Oscillatory stress stimulation uncovers an Achilles’ heel of the yeast MAPK signaling network.
Amir Mitchell,Ping Wei,Wendell A. Lim.
Science 2015; 350, 1379-1383. [PubMed]
Consistent rationalization of type-2 topoisomerases' unknotting, decatenating, supercoil-relaxing actions and their scaling relation.
Zhirong Liu* and Hue Sun Chan*.
J. Phys.: Condens. Matter. 27 (35), 354103/1-13 (2015). [PubMed]
The application of physics in the study of cell polarity during tumor cell migration.
Wang Jing,Yang Gen,Liu Feng.
Acta Phys. Sin. 2015 64 (5): 058707, Invited Review. [PubMed]
Calumenin and fibulin-1 on tumor metastasis: Implications for pharmacology.
Pengli Zheng,Qiao Wang,Junlin Teng,Jianguo Chen.
Pharmacological Research 2015 99:11-15. Invited Review. [PubMed]
